Taxonomy browser (Streptomyces scabiei)

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Taxonomy browser (Streptomyces scabiei)

Streptomyces scabiei

Taxonomy ID: 1930 (for references in articles please use NCBI:txid1930)

current name

Streptomyces scabiei corrig. (ex Thaxter 1891) Lambert and Loria 1989

type strain of Streptomyces scabiei: personal::RL-34, ATCC :49173, CIP:105438, DSM :41658, ICMP :12542, JCM :7914, NCPPB:4066, NRRL :B-16523

includes:

Streptomyces sp. DSM 41005

Streptomyces sp. NBRC 12914

Streptomyces sp. DSM 41114

NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

"Streptomyces scabies" (Thaxter 1891) Waksman and Henrici 1948, effective name¹⁾

homotypic synonym:

"Oospora scabies" Thaxter 1891, effective name²⁾

"Actinomyces scabies" (Thaxter 1891) Gussow 1914, effective name³⁾

Lineage( full ): cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	54,973	54,965	2,922
Protein	139,442	130,666	-
Structure	23	7	-
Popset	66	66	-
Conserved Domains	1	1	-
GEO Datasets	54	54	-
PubMed Central	599	599	-
Gene	18,760	1	-
SRA Experiments	111	111	-
Protein Clusters	5,305	5,305	-
Identical Protein Groups	138,215	136,000	-
BioProject	25	24	-
BioSample	145	144	3
Datasets Genome	84	83	-
PubChem BioAssay	30	30	-
Taxonomy	3	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

Arahal DR (in press_2020)

Arahal, D.R. "Opinions 97, 98 and 99." Int. J. Syst. Evol. Microbiol. (in press) [NB: According to Opinion 97, the request for the conservation of the name Streptomyces scabies is denied, allowing the continued use of the correction Streptomyces scabiei. Opinions 98 and 99 conclude that in the absence of associated authentic type material, the names Bacillus aeolius and Pectinatus portalensis, respectively, are not validly published.]

Labeda DP (2011)

Labeda, D.P. "Multilocus sequence analysis of phytopathogenic species of the genus Streptomyces." Int. J. Syst. Evol. Microbiol. (2011) 61:2525-2531.

Lambert DH & Loria R (1989)

Lambert, D.H., and Loria, R. "Streptomyces scabies sp. nov., nom. rev." Int. J. Syst. Bacteriol. (1989) 39:387-392. [No PubMed record available.]

Lambert DH et al. (2007)

Lambert, D.H., Loria, R., Labeda, D.P., and Saddler, G.S. "Recommendation for the conservation of the name Streptomyces scabies. Request for an Opinion." Int. J. Syst. Evol. Microbiol. (2007) 57:2447-2448.

Truper HG (2008)

Truper, H.G.. "Against conservation of specific epithets formed wrongly as nominative nouns in apposition." Int. J. Syst. Evol. Microbiol. (2008) 58:1508-1510.

Trüper HG & De'clari L (1997) (reference relating to orthographic revision)

Trüper, H.G., and De'clari, L. "Taxonomic note: Necessary correction of specific epithets formed as substantives (nouns) 'in apposition'." Int. J. Syst. Bacteriol. (1997) 47(3):908-909. [No PubMed record available.]

Waksman SA & Henrici AT (1948b)

Waksman, S.A., and Henrici, A.T. "Family III. Streptomycetaceae Waksman and Henrici." IN: Breed, Murray, and Hitchens (Eds.), Bergey's Manual of Determinative Bacteriology, 6th Ed. (1948). The Williams and Wilkins Co., Balitmore. pp. 929-980. [No PubMed record available.]

Young JM et al. (1996) (reference with type strain information)

Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Streptomyces scabiei	meta-databases	BacDive
2 records from this provider	organism-specific	BioCyc
Streptomyces scabiei corrig. (ex Thaxter 1891) Lambert and Loria, 1989	taxonomy/phylogenetic	Encyclopedia of life
GOLD: 12 Organisms	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Streptomyces scabiei	culture/stock collections	Global Catalogue of Microorganisms
2 records from this provider	taxonomy/phylogenetic	Index Fungorum
18 records from this provider	organism-specific	Integrated Microbial Genomes
Streptomyces scabiei \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry
3 records from provider	taxonomy/phylogenetic	Systematic Mycology and Microbiology Laboratory, Fungal Databases

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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