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Taxonomy browser (Shimia aestuarii)

Shimia aestuarii

Taxonomy ID: 254406 (for references in articles please use NCBI:txid254406)
current name
Shimia aestuarii (Yi and Chun 2007) Wirth and Whitman 2018 in [Wirth JS & Whitman WB (2018)]
basionym:
Thalassobius aestuarii Yi and Chun 2007, nom. illeg. 1) in [Validation List No. 115 (2007)]
type strain of Thalassobius aestuarii: DSM:15283, IMSNU:14011, JCM:14332, KCTC:12049, personal::JC2049
homotypic synonym:
Thalassovita aestuarii (Yi and Chun 2007) Deshmukh and Oren 2023 in [Deshmukh UB & Oren A (2023e)]
includes:
Rhodobacteraceae bacterium JC2049
NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Shimia
   Entrez records   
Database name Direct links Links from type
Nucleotide 162 58
Protein 10,706 -
Genome 1 -
Popset 3 -
PubMed Central 4 -
SRA Experiments 1 -
Identical Protein Groups 8,256 -
BioProject 5 -
BioSample 3 1
Assembly 2 1
Taxonomy 1 -

Notes:

Comments and References:

Wirth JS & Whitman WB (2018), PubMed: abstract
Wirth, J.S., and Whitman, W.B. "Phylogenomic analyses of a clade within the roseobacter group suggest taxonomic reassignments of species of the genera Aestuariivita, Citreicella, Loktanella, Nautella, Pelagibaca, Ruegeria, Thalassobius, Thiobacimonas and Tropicibacter, and the proposal of six novel genera." Int. J. Syst. Evol. Microbiol. (2018) 68(7):2393-2411.
Validation List No. 115 (2007), PubMed: abstract
Int. J. Syst. Evol. Microbiol. (2007) 57(5):893-897.
Deshmukh UB & Oren A (2023e), PubMed: abstract
Deshmukh, U.B., and Oren, A. "Proposal of Thalassovita gen. nov. and Alloyangia gen. nov. as replacement names for the illegitimate prokaryotic generic names Thalassobius and Yangia, respectively." Int. J. Syst. Evol. Microbiol. (2023) 73(9):006025.
Yi H & Chun J (2006)
Yi, H., and Chun, J. "Thalassobius aestuarii sp. nov., isolated from tidal flat sediment." J. Microbiol. (2006) 44:171-176.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Shimia aestuarii meta-databases BacDive
2 records from this provider organism-specific BioCyc
GOLD: Go0111041 organism-specific Genomes On Line Database
Thalassobius aestuarii culture/stock collections Global Catalogue of Microorganisms
2616644822: Shimia aestuarii DSM 15283 organism-specific Integrated Microbial Genomes
Thalassobius aestuarii Yi & Chun, 2007 taxonomy/phylogenetic Ocean Biogeographic Information System
Thalassobius aestuarii Yi & Chun, 2007 taxonomy/phylogenetic World Register of Marine Species
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

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strain
A100 [1] AMM-P-2 [1 1 73] AMM-P-3 [1] AMT-P-13 [1]
AMT-P-15 [1] AMT-P-16 [1] AMT-P-2 [1] AMT-P-24 [1]
AMT-P-5 [1] AMT-P-6 [1] B6-20 [1] CAU 1628 [1]
D7014 [1 1] D7019 [1 1] DC25 [1] DSM 15283 [1 1 56 4068]
F84013 [1 1] JC2049 [3 8256 162 3 1] M121-100 [1] M3S_3052 [1]
N124-100 [1] NBU2367 [1] R76 [1] T26-100% [1]
T37-100% [1] T39-96% [1] T45-100% [1] T53 [1]
TF-212 [1] X61 [1] sediment_20 [1] suH-89 [1 1]
isolate
101-UT [1] IMCC6021 [1]


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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