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Taxonomy browser (Pseudomonas)

Pseudomonas

Taxonomy ID: 286 (for references in articles please use NCBI:txid286)
current name
Pseudomonas Migula 1894 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
homotypic synonym:
Pseudomonas Migula 1894 emend. Yang et al. 2013, emended name 1)
homotypic synonym:
"Chlorobacterium" Guillebeau 1890, nom. rejic. Opin. 6 (not "Chlorobacterium" Lauterborn 1916)
NCBI BLAST name: g-proteobacteria
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Liquidomonas" Orla-Jensen 1909, effective name 2)
heterotypic synonym
"Loefflerella" Holden 1935, effective name 3)
heterotypic synonym
Serpens Hespell 1977 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
heterotypic synonym
Chryseomonas Holmes et al. 1986
heterotypic synonym
Flavimonas Holmes et al. 1987
common name(s) RNA similarity group I
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 5,068,303 514
Protein 52,807,501 1,753,305
Structure 4,439 18
Genome 380 1
Popset 6,761 5,450
Conserved Domains 77 59
GEO Datasets 11,236 16
PubMed Central 189,565 189,494
Gene 1,280,537 -
SRA Experiments 79,826 739
GEO Profiles 141,600 -
Protein Clusters 34,842 20,608
Identical Protein Groups 17,993,219 1,751,909
BioProject 8,282 160
BioSample 96,888 646
Assembly 42,453 -
PubChem BioAssay 13,866 81
Taxonomy 29,567 1

Notes:

Comments and References:

Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Pseudomonas sensu stricto
The genus Pseudomonas is defined here to include the fluorescent pseudomonads and their non-fluorescent relatives, identified by Palleroni et al. (1973) as "rRNA similarity group I".
Pseudomonas (LPSN link)
Chryseomonas (LPSN link)
Flavimonas (LPSN link)
Serpens (LPSN link)
Ait Tayeb L et al. (2005)
Ait Tayeb, L., Ageron, E., Grimont, F., and Grimont, P.A. "Molecular phylogeny of the genus Pseudomonas based on rpoB sequences and application for the identification of isolates." Res. Microbiol. (2005) 156:763-773.
Anzai Y et al. (1997)
Anzai, Y., Kudo, Y., and Oyaizu, H. "The phylogeny of the genera Chryseomonas, Flavimonas, and Pseudomonas supports synonymy of these three genera." Int. J. Syst. Bacteriol. (1997) 47:249-251.
Anzai Y et al. (2000)
Anzai, Y., Kim, H., Park, J.Y., Wakabayashi, H., and Oyaizu, H. "Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence." Int. J. Syst. Evol. Microbiol. (2000) 50:1563-1589.
Hespell RB (1977)
Hespell, R.B. "Serpens flexibilis gen. nov., sp. nov., an unusually flexible, lactate-oxidizing bacterium." Int. J. Syst. Bacteriol. (1977) 27:371-381. [No PubMed record available.]
Holmes B et al. (1986)
Holmes, B., Steigerwalt, A.G., Weaver, R.E., and Brenner, D.J. "Chryseomonas polytricha gen. nov., sp. nov., a Pseudomonas-like organism from human clinical specimens and formerly known as group Ve-1." Int. J. Syst. Bacteriol. (1986) 36:161-165. [No PubMed record available.]
Kessler B & Palleroni NJ (2000)
Kessler, B., and Palleroni, N.J. "Taxonomic implications of synthesis of poly-beta-hydroxybutyrate and other poly-beta-hydroxyalkanoates by aerobic pseudomonads." Int. J. Syst. Evol. Microbiol. (2000) 50:711-713.
Ochi K (1995b)
Ochi, K. "Comparative ribosomal protein sequence analyses of a phylogenetically defined genus, Pseudomonas, and its relatives." Int. J. Syst. Bacteriol. (1995) 45:268-273.
Palleroni NJ et al. (1973)
Palleroni, N.J., Kunisawa, R., Contopoulou, R., and Doudoroff, M. "Nucleic acid homologies in the genus Pseudomonas." Int. J. Syst. Bacteriol. (1973) 23:333-339. [No PubMed record available.]
Yang G et al. (2013e)
Yang, G., Han, L., Wen, J., and Zhou, S. "Pseudomonas guangdongensis sp. nov., isolated from an electroactive biofilm, and emended description of the genus Pseudomonas Migula 1894." Int. J. Syst. Evol. Microbiol. (2013) 63:4599-4605.
Young JM & Park DC (2007)
Young, J.M., and Park, D.-C. "Probable synonymy of the nitrogen-fixing genus Azotobacter and the genus Pseudomonas." Int. J. Syst. Evol. Microbiol. (2007) 57:2894-2901.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Chryseomonas taxonomy/phylogenetic Encyclopedia of life
5 records from this provider organism-specific Genomes On Line Database
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OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
2 records from this provider taxonomy/phylogenetic Ocean Biogeographic Information System
2 records from this provider taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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