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Taxonomy browser (Pseudomonas chlororaphis subsp. chlororaphis)

Pseudomonas chlororaphis subsp. chlororaphis 1)

Taxonomy ID: 333 (for references in articles please use NCBI:txid333)
current name
Pseudomonas chlororaphis subsp. chlororaphis (Guignard and Sauvageau 1894) Peix et al. 2007
type strain of Pseudomonas chlororaphis subsp. chlororaphis: ATCC:9446, CCUG:552 B, CFBP:2132, CIP:63.22, DSM:50083, HAMBI:2011, IFO:3904, JCM:2778, BCCM/LMG:5004, NBRC:3904, NCCB:76041, NCIMB:9392, NCTC:13002, VKM:B-1246
NCBI BLAST name: g-proteobacteria
Rank: subspecies
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Pseudomonas fluorescens (biotype D)
heterotypic synonym
Pseudomonas fluorescens biotype d
heterotypic synonym
Pseudomonas fluorescens bv. D
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas chlororaphis group; Pseudomonas chlororaphis
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 1,045 268 301
Protein 27,300 25,922 -
Genome 1 1 -
Popset 5 5 -
GEO Datasets 2 2 -
SRA Experiments 60 60 -
Identical Protein Groups 12,558 7,103 -
BioProject 9 7 -
BioSample 66 64 64
Assembly 9 6 -
Taxonomy 3 1 -

Notes:

Comments and References:

Peix A et al. (2007)
Peix, A., Valverde, A., Rivas, R., Igual, J.M., Ramirez-Bahena, M.H., Mateos, P.F., Santa-Regina, I., Rodriguez-Barrueco, C., Martinez-Molina, E., and Velazquez, E. "Reclassification of Pseudomonas aurantiaca as a synonym of Pseudomonas chlororaphis and proposal of three subspecies, P. chlororaphis subsp. chlororaphis subsp. nov., P. chlororaphis subsp. aureofaciens subsp. nov., comb. nov. and P. chlororaphis subsp. aurantiaca subsp. nov., comb. nov." Int. J. Syst. Evol. Microbiol. (2007) 57:1286-1290.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider organism-specific BioCyc
Pseudomonas aureofaciens Kluyver 1956 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0518163 organism-specific Genomes On Line Database
Pseudomonas chlororaphis subsp. chlororaphis culture/stock collections Global Catalogue of Microorganisms
2 records from this provider organism-specific Integrated Microbial Genomes
Pseudomonas chlororaphis subsp. chlororaphis | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Pseudomonas aureofaciens taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

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strain
13B [1] 14A [1] 29A [1] 30-84 [7]
ATCC 9446 [2 57 74 12106] B23 [6] CFBP 2132 [1 1] DSM 50083 [2 56 12276]
DSM 50083T (type strain) [1] FJG17 [1 1] FJT5 [1 1] G05 [1 10]
GP72 strain GP72 [1 1 701 14] of Pseudomonas chlororaphis subsp. chlororaphis GP72 HNG6 [1 1] HNT3 [1] IFO 3904 [1 1]
IMV B-107 [2 2] KCTC 12349 [1 1] LMG 1245 [3] LMG 5004 [1 35 3 3]
LMG 5004T (type strain) [1] NBRC 3904 [1 2 76 1] NBRC 3905 [1 1] NBRC 3906 [1 1]
NBRC 3907 [1 1] NBRC 3908 [1 1] NBRC 3909 [1 1] NBRC 3910 [1 1]
NBRC 3911 [1 1] NBRC 3912 [1 1] NBRC 3913 [1 1] NBRC 3914 [1 1]
NBRC 3915 [1 1] NBRC 3916 [1 1] NBRC 3917 [1 1] NBRC 3918 [1 1]
NCIMB 11881 [2 2] NCIMB 9392 [1 1] NCIMB 9402 [2 2] O6 [1]
PCL1391 [2] PGS12 [1 1] VRL_PS4.2_36 [1] VRL_PS4.2_8 [1]
type strain: LMG 1245 [1 1] type strain: LMG 5004 [1 1]
isolate
06ID4-Lx2A [1] DSM 50083T [1 52] ICMP 13613 (= ATCC 9446) strain ICMP 13613 (= ATCC 9446)
culture-collection
ATCC:9446 [2 74 12106] DSM:50083 [2 58 12279 1] LMG:1245 [1 1] LMG:5004 [1 1]
NBRC:3904 [1 75]

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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