Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
Taxonomy browser (Arabidopsis)

Arabidopsis

Taxonomy ID: 3701 (for references in articles please use NCBI:txid3701)
current name
Arabidopsis (DC.) Heynh., 1842
NCBI BLAST name: eudicots
Rank: genus
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Cardaminopsis Hayek
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 2,849,646 240
Protein 700,093 50
Structure 2,293 16
Conserved Domains 216 163
GEO Datasets 111,384 480
PubMed Central 147,078 147,067
Gene 85,293 -
HomoloGene 10,445 -
SRA Experiments 210,747 3,666
GEO Profiles 2,014,308 -
Protein Clusters 20,650 -
Identical Protein Groups 331,655 24
BioProject 9,970 225
BioSample 213,197 3,409
Datasets Genome 319 -
PubChem BioAssay 217 7
Taxonomy 50 1

Comments and References:

FNA - Arabidopsis
Al-Shehbaz IA. 2009. Arabidopsis (de Candolle) Heynhold in F. Holl and G. Heynhold, Fl. Sachsen. 1: 538. 1842. [name conserved]. In Flora of North America Editorial Committee (Eds.) Flora of North America North of Mexico, Vol. 7: Magnoliophyta: Salicaceae to Brassicaceae. New York and Oxford. On-line version.
Flora of China - Brassicaceae
Tai-yien Cheo, Lianli Lu, Guang Yang, Ihsan Al-Shehbaz & Vladimir Dorofeev. 2001. Brassicaceae Burnett. In Wu, Z. Y. & P. H. Raven, eds. Flora of China. Vol. 8 (Brassicaceae through Saxifragaceae). Science Press, Beijing, and Missouri Botanical Garden Press, St. Louis. Online at Flora of China: www.efloras.org
Al-Shehbaz IA 2012, doi:10.1002/tax.615002
Shehbaz IA. 2012. A generic and tribal synopsis of the Brassicaceae. Taxon 61(5): 931-954.
Al-Shehbaz IA et al. 2006, doi:10.1007/s00606-006-0415-z
Al-Shehbaz IA, Beilstein MA and Kellogg EA. 2006. Systematics and phylogeny of the Brassicaceae (Cruciferae): an overview. Plant Systematics and Evolution 259: 89-120.
Warwick SI et al. 2006b
Warwick SI, Francis A and Al-Shehbaz IA. 2006. Brassicaceae: Species checklist and database on CD-Rom. Plant Systematics and Evolution 259(2-4): 249-258. DOI 10.1007/s00606-006-0422-0
O'Kane M & Al-Shehbaz IA 1997
O'Kane SL, Jr. and Al-Shehbaz IH. 1997. A synopsis of Arabidopsis (Brassicaceae). Novon 7: 323-327.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
GOLD: Go0076079 organism-specific Genomes On Line Database
2 records from this provider taxonomy/phylogenetic Integrated Taxonomic Information System
Arabidopsis taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Arabidopsis taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
2 records from this provider taxonomy/phylogenetic Plants of the World Online
2 records from this provider taxonomy/phylogenetic The International Plant Names Index
Arabidopsis taxonomy/phylogenetic TreeBase
2 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]