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Taxonomy browser (Fungi)


Taxonomy ID: 4751 (for references in articles please use NCBI:txid4751)
current name
NCBI BLAST name: fungi
Rank: kingdom
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 4 (Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate Mitochondrial; Mycoplasma; Spiroplasma)
Other names:
heterotypic synonym
blast name
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta
   Entrez records   
Database name Subtree links Direct links
Nucleotide 20,656,518 211
Protein 62,776,355 1
Structure 12,791 -
Genome 5,225 -
Popset 55,384 1,726
Conserved Domains 1,609 461
GEO Datasets 150,709 80
PubMed Central 622,433 57
Gene 6,551,150 -
HomoloGene 8,813 -
SRA Experiments 394,537 5,210
GEO Profiles 1,081,065 -
Identical Protein Groups 35,930,926 1
BioProject 39,317 174
BioSample 433,583 6,033
Assembly 19,025 -
Genetic Testing Registry 1 -
PubChem BioAssay 41,659 66
Taxonomy 198,807 1

Comments and References:

Moore (1980)
Moore RT. 1980. Taxonomic proposals for the classification of marine yeasts and other yeastlike fungi including the smuts. Botanica Marina 23: 361-373.
Keeling (2003)
Keeling PJ, 2003. Congruent evidence for alpha-tubulin and beta-tubulin gene phylogenies for a zygomycete origin of Microsporidia. Fungal Genetics and Biology 38: 298-309.
Baldauf et al. 2000
Baldauf SL, Roger AJ, Wenk-Siefert I, Doolittle WF, 2000. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290: 972-977.
Liu Y et al. 2006
Liu, Y., M. C. Hodson, and B. D. Hall. 2006. Loss of the flagellum happened only once in the fungal lineage: phylogenetic structure of kingdom Fungi inferred from RNA polymerase II subunit genes. BMC Evolutionary Biology 6:74.
James TY et al. 2006
James, T. Y., F. Kauff, C. Schoch, P. B. Matheny, V. Hofstetter, C. Cox, G. Celio, C. Gueidan, E. Fraker, J. Miadlikowska, H. T. Lumbsch, A. Rauhut, V. Reeb, A. E. Arnold, A. Amtoft, J. E. Stajich, K. Hosaka, G.-H. Sung, D. Johnson, B. O*Rourke, M. Crockett, M. Binder, J. M. Curtis, J. C. Slot, Z. Wang, A. W. Wilson, A. Schu*ler, J. E. Longcore, K. O*Donnell, S. Mozley-Standridge, D. Porter, P. M. Letcher, M. J. Powell, J. W. Taylor, M. M. White, G. W. Griffith, D. R. Davies, R. A. Humber, J. B. Morton, J. Sugiyama, A. Y. Rossman, J. D. Rogers, D. H. Pfister, D. Hewitt, K. Hansen, S. Hambleton, R. A. Shoemaker, J. Kohlmeyer, B. Volkmann-Kohlmeyer, R. A. Spotts, M. Serdani, P. W. Crous, K. W. Hughes, K. Matsuura, E. Langer, G. Langer, W. A. Untereiner, R. Lucking, B. Budel, D. M. Geiser, A. Aptroot, P. Diederich, I. Schmitt, M. Schultz, R. Yahr, D. Hibbett, F Lutzoni, D. McLaughlin, J. Spatafora, and R. Vilgalys. 2006a. Reconstructing the early evolution of the fungi using a six gene phylogeny. Nature 443: 818-822.
Spatafora et al. (2017), doi:10.1128/microbiolspec.FUNK-0053-2016
Spatafora J.W. et al. 2017. The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies. Microbiol Spectrum 5(5):FUNK-0053-2016.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Fungi taxonomy taxonomy/phylogenetic Arctos Specimen Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Fungi culture/stock collections Global Catalogue of Microorganisms
Fungi taxonomy/phylogenetic Integrated Taxonomic Information System
Fungi taxonomy/phylogenetic Lifemap
Fungi taxonomy/phylogenetic MycoBank
12 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Fungi taxonomy/phylogenetic Ocean Biogeographic Information System
ToL taxonomy/phylogenetic Tree of Life
Fungi taxonomy/phylogenetic TreeBase
UCMP taxonomy/phylogenetic UCMP phylogeny exhibit
Fungi taxonomy/phylogenetic World Register of Marine Species
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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