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Taxonomy browser (Stenotrophomonas pavanii)

Stenotrophomonas pavanii

Taxonomy ID: 487698 (for references in articles please use NCBI:txid487698)
current name
Stenotrophomonas pavanii Ramos et al. 2011
type strain of Stenotrophomonas pavanii: CBMAI:564, BCCM/LMG:25348, personal::ICB 89, DSM:25135
includes:
Stenotrophomonas sp. ICB 89
Stenotrophomonas sp. Y
NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae; Stenotrophomonas
   Entrez records   
Database name Direct links Links from type
Nucleotide 4,353 307
Protein 54,918 -
Genome 1 -
Popset 29 -
PubMed Central 80 -
Gene 4,260 -
SRA Experiments 33 -
Protein Clusters 1 -
Identical Protein Groups 42,040 -
BioProject 20 -
BioSample 58 3
Assembly 28 -
Taxonomy 1 -

Comments and References:

Patil PP et al. (2016)
Patil, P.P., Midha, S., Kumar, S., and Patil, P.B. "Genome sequence of type strains of genus Stenotrophomonas." Front. Microbiol. (2016) 7:309.
Ramos PL et al. (2011)
Ramos, P.L., Van Trappen, S., Thompson, F.L., Rocha, R.C.S., Barbosa, H.R., De Vos, P., and Moreira-Filho, C.A. "Screening for endophytic nitrogen-fixing bacteria in Brazilian sugar cane varieties used in organic farming and description of Stenotrophomonas pavanii sp. nov." Int. J. Syst. Evol. Microbiol. (2011) 61:926-931.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Stenotrophomonas pavanii meta-databases BacDive
2 records from this provider organism-specific Genomes On Line Database
Stenotrophomonas pavanii culture/stock collections Global Catalogue of Microorganisms
3 records from provider organism-specific Integrated Microbial Genomes
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

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strain
10-B-F [1] 10a [1 1] 12_84_soilAgar [1] 134 [1]
2(new) [1] 205A [1] 26B [1 1] 381-a etp [1]
3CRMUM60.6 [1] 4A [1] A-10 [1] A-16 [1]
A-6 [1 1] A15 [1] A59 [1] A64 [1]
AA1 [1] ABIP 1763 [1] ABIP 1765 [1] ABIP 1766 [1]
ABIP 1768 [1] ABIP 1769 [1] ABIP 1772 [1] ABIP 1774 [1]
ABIP 1781 [1] ABIP 2293 [1] ABIP 2310 [1] ABIP 2311 [1]
ABIP 3048 [1] ABIP 3076 [1] AC3 [1] AG11 [1]
AIMST Ngme5 [1 1] AP 17 [1] AP44 [1] AP54 [1]
APP137 [1] APP32 [1] APP40 [1] AS1F [1]
AS1R [1] AUCBT [1] Adu32 [1] Adu4 [1]
Au-Ste27 [1] Au-Ste8 [1] Au-Ste9 [1] B16 [1 1]
B20 [1 1 2 2] BBC01 [1 1] BC1 [1] BC13 [1 1]
BDAM42-2 [1] BF2 [1] BGRI EBC SK18-T14 [1] BIH [1 1]
BKA5 [1] BPW [1] BRF2 [1] BT5H2 [1 1]
BWK1 [1 1 92 3980] BioX607 [1] BioX610 [1] BioX612 [1]
BioX614 [1] BioX622 [1] BioX625 [1] BioX628 [1]
BioX636 [1] Bt5_50S [1 1] C2.2 [1] C4 [1]
C5S3FN [1] CAB1 [1] CCUG 59972 [2 2 2] CCV130 [1 127]
CEMTC_1588 [1] CEMTC_4255 [1] CEMTC_8743 [1] CEMTC_8987 [1]
CEMTC_9474 [1] CGNE-75 [1] CLB5 [1] CM3FG14 [1]
CS18KG0LA401 [1] CTRTINFB4 [1] D118-3 [1 1] D118-7 [1 1]
D122-0828-b2-2-1a [1] D122-0828-b3-2a [1] D122-0908-b4-2-1-1 [1] DB1 [1]
DBS13.1 [1] DIB76/BCS17 [1] DRC-18-11 [1] DRC-18-7B [1]
DSM 119-AFMT-3%NaCl-C05 [1] DSM 25135 [1 1 262 3835] DSM 25135; TAV43LB [1] DYJOTU14 [1]
DZ 3 [1] E24 [1] E4R [1] EA33 [1]
EB31 [1] EC13N67 [1] EC15A33 [1] EC62 [1]
ESW3 [1] ETEOC04 [1] FACU [1] G12-4 [1]
G19 [1] G21B2 [1] GRSPKGRMB E2 [1] GS2 [1]
Gxun-17 [1] H11 [1] H76 [1 1] HB03 [1 1]
HBUAS69328 [1] HBUAS69444 [1] HER-9 [1] HM01 [1]
HM18 [1] HM26 [1] HM65 [1] ICB 89 [58 42040 4351 29 2 33]
ICB89 strain ICB 89 [58 42040 4351 29 2 33] ICKM-9 [1] IITR154 [1] IITRCS146 [1]
INTRON KRG 28A [1] IR20 [1] IRB19 [1] IWE-6 [1]
JEX1 [1] JOFKJC1 [1] JST3 [1 1] JY-01 [1]
KSR2 [1] KUMC_18 [1] KW28 [1] LEM11 [1 1]
LMG 25348 [2 2 39 3971] LMG 25348 U-SMWF-Fe2 [1] LMG 25348 U-SMWF-T10-8 [1] LNPC87 [1]
L_8 [1 1] M41 [1] M61 [1] MCAR/VC/ZOO/RIY/2021 [1]
MCM4 [1] ME55 [1 151 1] MET1 [1] MET18 [1]
MET2 [1] MET4 [1] MET67 [1] MET7 [1]
MET77 [1] MHFSK(0501) [1] MHSD12 [1 1 32 1] MJ14 [1 1]
MJ7 [1 1] MR2A123 [1] MR31 [1 1] MSM-1415 [1 1]
MT3 [1] NBRICRYMA1 [1] NBT2C [1 1] NC2A5 [1]
NC2A6 [1] NEA-4 [1] NG53 [1] NIBSM_CcS10 [1]
NIOT.M2S7W8HZ4 [1] NM446 [1] NRB007 [1] NRB008 [1]
NRH1 [1] NRH4 [1] NRPSBSP-1 [1] NSPmBx06 [1]
NWE-11 [1] NWR-13 [1] NWUBe02 [1] OO9 [1]
OOKAAOFFA-23 [1] OsEnb_PLM_L75 [1] OsEnb_PLM_S11 [1] Ovo18 [1]
P2YN4 [1 1 25] PCA100 [1] PDS-5 [1 1] PDW597 [1]
PE15 [1 1] PI-27 [1 1 2 3954 1] PL1W1 [1] RAE1 [1]
RAE3 [1] RBL17-22 [1] RN-169 [1] RSN6 [1 1]
RSSMO(a)4 [1] S1-2 [1] S1-5 [1] S15 [10 2]
S18795 [1 318 4341 1] S2-6 [1] S2F [1] S32SP19 [1]
SA22 [1] SBK8-GR3 [1] SC2 [1] SC4 [1]
SCSB-16 [1] SD21 [1] SD22 [1] SH108 [1]
SI-C4 [1] SII-C1 [1] SIII-C1 [1] SMYL107 [1 41]
SMYL54 [1 60] SMYL83 [1 67] SMYL96 [1 76] SOB5 [1]
SRO8 [1] SSMB3 [1 1] SWBL18 [1] SWMBL11 [1]
SitB440 [1 1] T2 [1] TA [1] TKT [1]
U4 [1] UASR-1 [1] UC4096_47 [1] UMBR4053 [1]
V2L-F12 [1] VAS5:2019 [1] VASSNBRIB1.22 [1] VCE_6 [1]
VERA5 [1] VRL_CM60 [1] W5-1 [1 1] W5-2 [1 1]
W5-6 [1 1] WEP_10_BC_10.1 [1] WEP_10_BC_10.2 [1] WEP_2_BC_2.1 [1]
WEP_3_BC_3.4 [1] WH17 [1] WSB114 [1] WSB22 [1]
WZN-1 [1] Wat11 [1] XNIP000B0554 [1] XNIP000B0572 [1]
Y [1 36 4149 2] Y1 [1] YII-20 [1] ZM_BH_EA6A [1]
ZNB15 [1] ZNB25 [1] ZSBA113 [1] ZSBA1370 [1]
ZSBA22161 [1] ZSBA3142 [1] ZSBNK7(2) [1] ZSTG31102 [1]
ZSTM2166/B [1] ism1 [1 11] ism2 [1 12] mr_60 [1]
msm2 [1 8] skuast-PAD30 [1] yy04 [1]
isolate
BS3-04 [1] HI113 [1] S5O [1 1] T12 [1]
nat-host
Dicoma anomala [1] Homo sapiens [34] Mareca penelope [1] PLANT [1]
oil palm [1] puffer fish [1]
specimen-voucher
IBBR_M42-2 [1]
culture-collection
DSM:119-AFMT-3%NaCl-C05 [1] DSM:25135 [1 262 3835] LMG:25348 [2] LMG:25348 U-SMWF-Fe2 [1]
LMG:25348 U-SMWF-T10-8 [1]


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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