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Taxonomy browser (Pantoea agglomerans)

Pantoea agglomerans

Taxonomy ID: 549 (for references in articles please use NCBI:txid549)
current name
Pantoea agglomerans (Beijerinck 1888) Gavini et al. 1989
type strain of Pantoea agglomerans: ATCC:27155, CCUG:539, CDC:1461-67, CFBP:3845, CIP:57.51, DSM:3493, ICMP:12534, ICPB:3435, JCM:1236, BCCM/LMG:1286, NBRC:102470, NCTC:9381
homotypic synonym:
Enterobacter agglomerans (Beijerinck 1888) Ewing and Fife 1972 (Approved Lists 1980) emend. Beji et al. 1988, nom. approb. 1)
Pantoea sp. ATCC 29923
Pantoea sp. SL1_M5
bacterium G33-1
NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Pantoea herbicola
homotypic synonym:
"Bacterium herbicola" Lohnis 1911, effective name 2)
"Bacterium herbicola" Geilinger 1921, effective name 2)
"Pseudomonas herbicola" (Geilinger 1921) de'Rossi 1927, effective name 2)
Erwinia herbicola (Lohnis 1911) Dye 1964
type strain of Erwinia herbicola: ATCC:33243, BCCM/LMG:2565, NCPPB:2971, ICMP:272, DSM:3785, CIP:82.100
heterotypic synonym
"Bacillus milletiae" Kawakami and Yoshida 1920, effective name 2)
heterotypic synonym
Erwinia milletiae (Kawakami and Yoshida 1920) Magrou 1937 (Approved Lists 1980), nom. approb. 1)
type strain of Erwinia milletiae: ATCC:33261, NCPPB:2519, BCCM/LMG:2660
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea; Pantoea agglomerans group
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 17,418 16,859 115
Protein 473,938 450,910 -
Structure 9 8 -
Genome 1 1 -
Popset 369 369 -
GEO Datasets 8 8 -
PubMed Central 3,246 3,246 -
Gene 22,169 22,165 -
SRA Experiments 167 161 -
Protein Clusters 2,078 2,078 -
Identical Protein Groups 227,070 223,995 -
BioProject 158 150 -
BioSample 438 429 8
Assembly 206 196 3
PubChem BioAssay 5 5 -
Taxonomy 11 1 -


Comments and References:

image:Pantoea agglomerans
Beijerinck MW (1888)
Beijerinck, M.W. "Cultur des Bacillus radicola aus den Knollchen." Bot. Ztg. (1888) 46:740-750. [No PubMed record available.]
Beji A et al. (1988)
Beji, A., Mergaert, J., Gavini, F., Izard, D., Kersters, K., Leclerc, H., and DeLey, J. "Subjective synonymy of Erwinia herbicola, Erwinia milletiae and Enterobacter agglomerans and redefinition of the taxon by genotypic and phenotypic data." Int. J. Syst. Bacteriol. (1988) 38:77-88. [No PubMed record available.]
Collins MD & Jones D (1982)
Collins, M.D., and Jones, D. "Taxonomic studies on Corynebacterium beticola (Abdou)." J. Appl. Bacteriol. (1982) 52:229-233. [No PubMed record available.] (Note: the type strain of Corynebacterium beticola Abdou 1969 (Approved Lists 1980) should be assigned to the genus Erwinia as Erwinia herbicola; however, such a change has not been validly published.)
de'Rossi G (1927)
de'Rossi, G. Microbiologia agraria e technica. (1927) Unione Tipographico-Editrice Torinese, Torino. [No PubMed record available.]
Dye DW (1964)
Dye, D.W. "The taxonomic position of Xanthomonas trifolii (Huss, 1907) James 1955." N. Z. J. Sci. (1964) 7:261-269. [No PubMed record available.]
Edwards J et al. (2004)
Edwards, J., Baque, E., and Tang, J.S. "Proposal to acknowledge Beijerinck as the original author of the species Pantoea agglomerans. Request for an Opinion." Int. J. Syst. Evol. Microbiol. (2004) 54:2437. Published online 13 August 2004. doi:10.1099/ijs.0.02955-0
Ewing WH & Fife MA (1972)
Ewing, W. H., and Fife, M. A. "Enterobacter agglomerans (Beijerinck) comb. nov. (the Herbicola-Lathyri bacteria)." Int. J. Syst. Bacteriol. (1972) 22:4-11. [No PubMed record available.]
Garrity GM et al. (2011)
Garrity, G.M., Labeda, D.P., and Oren, A. "Judicial Commission of the International Committee on Systematics of Prokaryotes. XIIth International (IUMS) Congress of Bacteriology and Applied Microbiology. Minutes of the meetings, 3, 4 and 6 August 2008, Istanbul, Turkey." Int. J. Syst. Evol. Microbiol. (2011) 61:2775-2780.
Gavini F et al. (1989)
Gavini, F., Mergaert, J., Beji, A., Mielcarek, C., Izard, D., Kersters, K., and De Ley, J. "Transfer of Enterobacter agglomerans (Beijerinck 1888) Ewing and Fife 1972 to Pantoea gen. nov. as Pantoea agglomerans comb. nov. and description of Pantoea dispersa sp. nov." Int. J. Syst. Bacteriol. (1989) 39:337-345. [No PubMed record available.]
Geilinger H (1921)
Geilinger, H. "Experimentalle Beitrage zur Mikrobiologie der Getreidamehl. I. Ueber koliartige Mehibakterien." Mitt. Lenensm. Hyg., Bern (1921) 12:49-81;105-119;231-262. [No PubMed record available.]
Tindall, B.J. "The combination Enterobacter agglomerans is to be cited as Enterobacter agglomerans (Beijerinck 1888) Ewing and Fife 1972 and the combination Pantoea agglomerans is to be cited as Pantoea agglomerans (Beijerinck 1888) Gavini et al. 1989. Opinion 90. Judicial Commission of the International Committee on Systematics of Prokaryotes." Int. J. Syst. Evol. Microbiol. (2014) 64:3582-3583.
Kawakami K & Yoshida S (1920)
Kawakami, K., and Yoshida, S.: Bot. Mag. Tokyo (1920) 34:110-115. [No PubMed record available.]
Lohnis F (1911)
Lohnis, F. Landwirtschaftlich-bakteriologishes Praktikum, (1911). Gebruder Borntraeger, Berlin, pp. 1-156. [No PubMed record available.]
Magrou J (1937)
Magrou, J. In Hauduroy, P., G. Ehringer, A. Urgain, G. Guillot, and J. Mangrou (Editors). Dictionnaire des bacteries pathogenes pour l'homme les animaux et als plantes (1937). Masson and Co., Paris. [No PubMed record available.]
Skerman VBD et al. (1980) (Enterobacter agglomerans)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Skerman VBD et al. (1980) (Erwinia herbicola)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Skerman VBD et al. (1980) (Erwinia milletiae)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.
Young JM et al. (1996) (reference with type strain information)
Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pantoea agglomerans meta-databases BacDive
6 records from this provider organism-specific BioCyc
Pantoea agglomerans (Ewing and Fife 1972) Gavini et al. 1989 taxonomy/phylogenetic Encyclopedia of life
14 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Pantoea agglomerans culture/stock collections Global Catalogue of Microorganisms
37 records from this provider organism-specific Integrated Microbial Genomes
2 records from provider taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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