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Taxonomy browser (Fusarium)

Fusarium

Taxonomy ID: 5506 (for references in articles please use NCBI:txid5506)
current name
Fusarium Link, 1809
NCBI BLAST name: ascomycete fungi
Rank: genus
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 4 (Mold Mitochondrial; Protozoan Mitochondrial; Coelenterate Mitochondrial; Mycoplasma; Spiroplasma)
Other names:
heterotypic synonym
Gibberella Sacc., 1877
heterotypic synonym
Albonectria Rossman & Samuels, 1999
heterotypic synonym
Cyanonectria Samuels & P. Chaverri, 2009 1) in [Samuels GJ et al. (2008)]
heterotypic synonym
Geejayessia Schroers, Gräfenhan & Seifert, 2011 2) in [Schroers HJ et al. (2011)]
heterotypic synonym
Bisifusarium L. Lombard, Crous & W. Gams, 2015 3) in [Lombard L et al. (2015)]
heterotypic synonym
Rectifusarium L. Lombard, Crous & W. Gams, 2015 4) in [Lombard L et al. (2015)]
heterotypic synonym
Luteonectria
homotypic synonym:
Luteonectria Sand.-Den., L. Lombard, Schroers & Rossman, 2021 in [Crous P et al. (2021)]
heterotypic synonym
Neocosmospora E.F. Sm., 1899 5)
heterotypic synonym
Haematonectria Samuels & Nirenberg, 1999
heterotypic synonym
Nothofusarium Crous, Sand.-Den. & L. Lombard, 2021 in [Crous P et al. (2021)]
heterotypic synonym
Setofusarium (Nirenberg & Samuels) Crous & Sand.-Den., 2021
basionym:
Fusarium sect. Setofusarium Nirenberg & Samuels, 1989
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Hypocreomycetidae; Hypocreales; Nectriaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 846,772 269
Protein 3,655,234 1
Structure 227 -
Genome 243 -
Popset 5,678 2,876
Conserved Domains 3 1
GEO Datasets 1,719 2
PubMed Central 37,144 36,930
Gene 342,202 -
SRA Experiments 6,802 144
Identical Protein Groups 1,960,566 1
BioProject 1,173 35
BioSample 7,158 115
Assembly 1,486 -
PubChem BioAssay 1,363 15
Taxonomy 5,506 1

Notes:

Comments and References:

Samuels GJ et al. (2008)
Samuels GJ, Lu B, Chaverri P, Candoussau F, Fournier J, Rossman AY. 2008. Cyanonectria, a new genus for Nectria cyanostoma and its Fusarium anamorph. Mycol Progress 8(1):49-58.
Schroers HJ et al. (2011), doi: 10.3114/sim.2011.68.05, PubMed: abstract
Schroers HJ, Gräfenhan T, Nirenberg HI, Seifert KA. 2011. A revision of Cyanonectria and Geejayessia gen. nov., and related species with Fusarium-like anamorphs. Stud Mycol 68:115-38.
Lombard L et al. (2015), doi: 10.1016/j.simyco.2014.12.002, PubMed: abstract
Lombard L, van der Merwe NA, Groenewald JZ, Crous PW. 2015. Generic concepts in Nectriaceae. Stud Mycol 80:189-245.
Crous P et al. (2021)
Crous P, Lombard L, Sandoval-Denis M, Seifert K, Schroers H, Chaverri P, et al. 2021. Fusarium: more than a node or a foot-shaped basal cell. Studies in Mycology 98:100116.
Summerell BA (2019), doi:10.1146/annurev-phyto-082718-100204
Summerell BA. 2019. Resolving Fusarium: Current Status of the Genus. Annu Rev Phytopathol 57:323-339.
Crous P et al. (2021), doi:10.1016/j.simyco.2021.100116
Crous P, Lombard L, Sandoval-Denis M, Seifert K, Schroers H, Chaverri P, Gené J, Guarro J, Hirooka Y, Bensch K, Kema G, Lamprecht S, Cai L, Rossman A, Stadler M, Summerbell R, Taylor J, Ploch S, Visagie C, Yilmaz N, Frisvad J, Abdel-Azeem A, Abdollahzadeh J, Abdolrasouli A, Akulov A, Alberts J, Araújo J, Ariyawansa H, Bakhshi M, Bendiksby M, Ben Hadj Amor A, Bezerra J, Boekhout T, Câmara M, Carbia M, Cardinali G, Castañeda-Ruiz R, Celis A, Chaturvedi V, Collemare J, Croll D, Damm U, Decock C, de Vries R, Ezekiel C, Fan X, Fernández N, Gaya E, González C, Gramaje D, Groenewald J, Grube M, Guevara-Suarez M, Gupta V, Guarnaccia V, Haddaji A, Hagen F, Haelewaters D, Hansen K, Hashimoto A, Hernández-Restrepo M, Houbraken J, Hubka V, Hyde K, Iturriaga T, Jeewon R, Johnston P, Jurjević Ž, Karalti İ, Korsten L, Kuramae E, Kušan I, Labuda R, Lawrence D, Lee H, Lechat C, Li H, Litovka Y, Maharachchikumbura S, Marin-Felix Y, Matio Kemkuignou B, Matočec N, McTaggart A, Mlčoch P, Mugnai L, Nakashima C, Nilsson R, Noumeur S, Pavlov I, Peralta M, Phillips A, Pitt J, Polizzi G, Quaedvlieg W, Rajeshkumar K, Restrepo S, Rhaiem A, Robert J, Robert V, Rodrigues A, Salgado-Salazar C, Samson R, Santos A, Shivas R, Souza-Motta C, Sun G, Swart W, Szoke S, Tan Y, Taylor J, Taylor P, Tiago P, Váczy K, van de Wiele N, van der Merwe N, Verkley G, Vieira W, Vizzini A, Weir B, Wijayawardene N, Xia J, Yáñez-Morales M, Yurkov A, Zamora J, Zare R, Zhang C, Thines M. 2021. Fusarium: more than a node or a foot-shaped basal cell. Studies in Mycology 98:100116.
Geiser DM et al. (2013), doi:10.1094/PHYTO-07-12-0150-LE
Geiser DM, Aoki T, Bacon CW, Baker SE, Bhattacharyya MK, Brandt ME, Brown DW, Burgess LW, Chulze S, Coleman JJ et al. 2013. One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use. Phytopathology 103(5):400-8.
O'Donnell (2000), doi:10.2307/3761588
O'Donnell K. 2000. Molecular phylogeny of the Nectria haematococca - Fusarium solani species complex. Mycologia 92: 919-938.
Rossman et al. (1999)
Rossman AY, Samuels GJ, Rogerson T, Lowen R. 1999. Genera of Bionectriaceae, Hypocreaceae and Nectriaceae (Hypocreales, Ascomycetes). Studies in Mycology 42: 1-248.
Sandoval-Denis & Crous (2018), doi:10.3767%2Fpersoonia.2018.41.06
Sandoval-Denis M., Crous P.W. 2018. Removing chaos from confusion: assigning names to common human and animal pathogens in Neocosmospora. Persoonia 41:109-129.
Geiser DM et al. (2020), doi:10.1094/PHYTO-08-20-0330-LE
Geiser DM, Al-Hatmi A, Aoki T, Arie T, Balmas V, Barnes I, Bergstrom GC, Bhattacharyya MKK, Blomquist CL, Bowden R, Brankovics B, Brown DW, Burgess LW, Bushley K, Busman M, Cano-Lira JF, Carrillo JD, Chang HX, Chen CY, Chen W, Chilvers MI, Chulze SN, Coleman JJ, Cuomo CA, de Beer ZW, de Hoog GS, Del Castillo-Múnera J, Del Ponte E, Diéguez-Uribeondo J, Di Pietro A, Edel-Hermann V, Elmer WH, Epstein L, Eskalen A, Esposto MC, Everts KL, Fernández-Pavía SP, da Silva GF, Foroud NA, Fourie G, Frandsen RJN, Freeman S, Freitag M, Frenkel O, Fuller KK, Gagkaeva T, Gardiner DM, Glenn AE, Gold S, Gordon T, Gregory NF, Gryzenhout M, Guarro J, Gugino B, Gutiérrez S, Hammond-Kosack K, Harris LJ, Homa M, Hong CF, Hornok L, Huang JW, Ilkit M, Jacobs A, Jacobs K, Jiang C, Jimenez-Gasco MDM, Kang S, Kasson MT, Kazan K, Kennell JC, Kim H, Kistler HC, Kuldau GA, Kulik T, Kurzai O, Laraba I, Laurence MH, Lee TY, Lee YW, Lee YH, Leslie JF, Liew ECY, Lofton LW, Logrieco A, Sánchez López-Berges M, Luque AG, Lysøe E, Ma LJ, Marra RE, Martin FN, May SR, McCormick S, McGee CT, Meis JF, Migheli Q, Mohamed Nor NMI, Monod M, Moretti A, Mostert D, Mulé G, Munaut F, Munkvold GP, Nicholson P, Nucci M, O'Donnell K, Pasquali M, Pfenning LH, Prigitano A, Proctor R, Ranque S, Rehner S, Rep M, Rodríguez-Alvarado G, Rose LJ, Roth MG, Ruiz-Roldán C, Saleh AA, Salleh B, Sang H, Scandiani M, Scauflaire J, Schmale D 3rd, Short DP, Šišić A, Smith J, Smyth CW, Son H, Spahr E, Stajich JE, Steenkamp E, Steinberg C, Subramaniam R, Suga H, Summerell BA, Susca A, Swett CL, Toomajian C, Torres-Cruz TJ, Tortorano AM, Urban M, Vaillancourt LJ, Vallad GE, van der Lee T, Vanderpool D, van Diepeningen AD, Vaughan M, Venter E, Vermeulen M, Verweij PE, Viljoen A, Waalwijk C, Wallace EC, Walther G, Wang J, Ward T, Wickes B, Wiederhold NP, Wingfield MJ, Wood AKM, Xu JR, Yang XB, Yli-Matilla T, Yun SH, Zakaria L, Zhang H, Zhang N, Zhang S, Zhang X. 2020. Phylogenomic analysis of a 55.1 kb 19-gene dataset resolves a monophyletic Fusarium that includes the Fusarium solani Species Complex. Phytopathology
O'Donnell et al. (2020), doi:10.1128/mSphere.00810-20
O'Donnell K, Al-Hatmi AMS, Aoki T, Brankovics B, Cano-Lira JF, Coleman JJ, de Hoog GS, Di Pietro A, Frandsen RJN, Geiser DM et al. 2020 No to Neocosmospora: Phylogenomic and Practical Reasons for Continued Inclusion of the Fusarium solani Species Complex in the Genus Fusarium. mSphere 5:e00810-00820.

Genome Information

Go to NCBI genomic BLAST page for Fusarium

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Fusarium taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Fusarium culture/stock collections Global Catalogue of Microorganisms
Fusarium taxonomy/phylogenetic Index Fungorum
Fusarium taxonomy/phylogenetic Lifemap
Fusarium Link taxonomy/phylogenetic MycoBank
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
2 records from this provider taxonomy/phylogenetic Ocean Biogeographic Information System
Fusarium taxonomy/phylogenetic TreeBase
2 records from provider taxonomy/phylogenetic World Register of Marine Species
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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