Taxonomy browser (Pectobacterium carotovorum)

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Taxonomy browser (Pectobacterium carotovorum)

Pectobacterium carotovorum

Taxonomy ID: 554 (for references in articles please use NCBI:txid554)

current name

Pectobacterium carotovorum (Jones 1901) Waldee 1945 (Approved Lists 1980) emend. Portier et al. 2019

homotypic synonym:

"Bacillus carotovorus" Jones 1901, effective name¹⁾

"Bacterium carotovorum" (Jones 1901) Lehmann and Neumann 1927, effective name²⁾

Erwinia carotovora (Jones 1901) Bergey et al. 1923 (Approved Lists 1980), nom. approb.³⁾

Pectobacterium carotovorum (Jones 1901) Waldee 1945 (Approved Lists 1980) emend. Hauben et al. 1999, nom. approb.⁴⁾

Pectobacterium carotovorum (Jones 1901) Waldee 1945 (Approved Lists 1980) emend. Gardan et al. 2003, nom. approb.⁵⁾

type strain of Pectobacterium carotovorum: ATCC :15713, CFBP:2046, CIP:82.83, DSM :30168, HAMBI:1429, ICMP :5702, BCCM/LMG :2404, NCAIM B.01109, NCPPB:312, VKM :B-1247

NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)

Lineage( full ): cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Pectobacterium

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	12,149	6,396	325
Protein	314,256	147,039	-
Structure	20	14	-
Genome	1	1	-
Popset	201	176	-
GEO Datasets	35	21	-
PubMed Central	3,808	3,797	-
Gene	17,677	4,436	-
SRA Experiments	107	58	-
Protein Clusters	4,424	4,424	-
Identical Protein Groups	176,578	108,697	-
BioProject	78	44	-
BioSample	210	121	4
Assembly	121	66	-
PubChem BioAssay	59	56	-
Taxonomy	8	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
4) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
5) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.

Comments and References:

image:Pectobacterium carotovorum

Associate Editor IJSB (1999) (Erwinia)

Associate Editor, IJSB: Validation List no. 68 (footnote //). Int. J. Syst. Bacteriol. (1999) 49:1-3.

Bergey DH et al. (1923)

Bergey, D.H., Harrison, F.C., Breed, R.S., Hammer B.W., and Huntoon, F.M. Bergey's Manual of Determinative Bacteriology, 1st ed. (1923) The Williams and Wilkins Co., Baltimore, pp. 1-442. [No PubMed record available.]

Gardan L et al. (2003)

Gardan, L., Gouy, C., Christen, R., and Samson, R. "Elevation of three subspecies of Pectobacterium carotovorum to species level: Pectobacterium atrosepticum sp. nov., Pectobacterium betavasculorum sp. nov. and Pectobacterium wasabiae sp. nov." Int. J. Syst. Evol. Microbiol. (2003) 53:449-454.

Hauben L et al. (1998)

Hauben, L., Moore, E.R.B., Vauterin, L., Steenackers, M., Mergaert, J., Verdonck, L., and Swings, J. "Phylogenetic position of phytopathogens within the Enterobacteriaceae." Syst. Appl. Microbiol. (1998) 21:384-397.

Jones LR (1901)

Jones, L.R. "Bacillus carotovorus n. sp., die Ursache einer weichen Faulnis der Mohre." Zentrabl. Bakteriol. Parasitenk. Infektionskr. Hyg. Abt. II (1901) 7:12-21. [No PubMed record available.]

Lehmann KB & Neumann R (1927)

Lehmann, K.B., and Neumann, R. Bakteriologie insbesondere Bakteriologische Diagnostik. II. Allgmeine und spezielle Bakteriologie 7 Aufl. (1927) J.F. Lehmann, Munchen. [No PubMed record available.]

Portier P et al. (2019)

Portier, P., Pédron, J., Taghouti, G., Fischer-Le Saux, M., Caullireau, E., Bertrand, C., Laurent, A., Chawki, K., Oulgazi, S., Moumni, M., Andrivon, D., Dutrieux, C., Faure, D., Hélias, V., and Barny, M.A. "Elevation of Pectobacterium carotovorum subsp. odoriferum to species level as Pectobacterium odoriferum sp. nov., proposal of Pectobacterium brasiliense sp. nov. and Pectobacterium actinidiae sp. nov., emended description of Pectobacterium carotovorum and description of Pectobacterium versatile sp. nov., isolated from streams and symptoms on diverse plants." Int. J. Syst. Evol. Microbiol. (2019) 69(10):3207-3216.

Skerman VBD et al. (1980) (Erwinia carotovora)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.

Skerman VBD et al. (1980) (Pectobacterium carotovorum)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.

Waldee EL (1945)

Waldee, E.L. "Comparative studies of some peritrichous phytopathogenic bacteria." Iowa State Coll. J. Sci. (1945) 19:435-484. [No PubMed record available.]

Young JM et al. (1996) (reference with type strain information)

Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Pectobacterium carotovorum	meta-databases	BacDive
2 records from this provider	organism-specific	BioCyc
GOLD: 12 Organisms	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Pectobacterium carotovorum	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
20 records from this provider	organism-specific	Integrated Microbial Genomes
Pectobacterium carotovorum (T) \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry
Erwinia carotovora	taxonomy/phylogenetic	Systematic Mycology and Microbiology Laboratory, Fungal Databases
Erwinia carotovora (Jones, 1901) Bergey et al., 1923	taxonomy/phylogenetic	World Register of Marine Species

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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