Taxonomy browser (Yersinia pseudotuberculosis)

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Taxonomy browser (Yersinia pseudotuberculosis)

Yersinia pseudotuberculosis

Taxonomy ID: 633 (for references in articles please use NCBI:txid633)

current name

Yersinia pseudotuberculosis (Pfeiffer 1889) Smith and Thal 1965 (Approved Lists 1980), nom. approb.¹⁾

type strain of Yersinia pseudotuberculosis: ATCC :29833, CCUG :5855, CIP:55.85, DSM :8992, JCM :1676, NCTC :10275, NBRC :105692

homotypic synonym:

"Bacterium pseudotuberculosis" (Pfeiffer 1889) Migula 1900, effective name²⁾

"Pasteurella pseudotuberculosis" (Pfeiffer 1889) Topley and Wilson 1929, effective name³⁾

"Shigella pseudotuberculosis" (Pfeiffer 1889) Haupt 1935, effective name⁴⁾

NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

"Bacillus pseudotuberkulosis" (sic) Pfeiffer 1889, effective name⁵⁾

heterotypic synonym

Pasteurella lymphangitidis Sneath and Stevens 1990

type strain of Pasteurella lymphangitidis: ATCC :49635, CCUG :27188, CIP:103823, NCTC :10547, personal::A82, personal::Jayaraman strain I, DSM :22972

Lineage( full ): cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia; Yersinia pseudotuberculosis complex

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	74,569	70,040	414
Protein	326,443	294,381	-
Structure	71	37	-
Genome	1	1	-
Popset	54	54	-
Conserved Domains	2	2	-
GEO Datasets	299	250	-
PubMed Central	4,473	4,473	-
Gene	26,569	4,745	-
SRA Experiments	1,228	993	-
Protein Clusters	1,784	1,784	-
Identical Protein Groups	50,985	50,000	-
BioProject	116	79	-
BioSample	1,223	1,040	11
Assembly	329	314	-
PubChem BioAssay	113	95	-
Taxonomy	19	1	-

Notes:

1) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
5) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

Gaillot O et al. (2013)

Gaillot, O., Lemenand, O., Marceau, M., and Simonet, M. "Proposed reclassification of Pasteurella lymphangitidis Sneath & Stevens 1990 as Yersinia pseudotuberculosis." Int. J. Syst. Evol. Microbiol. (2013) 63:3927-3929.

Haupt H (1935)

Haupt, H. "Zur Systematik der Bakterien. Die fur Mensch und Tier pathogenen gram-negativen alkali-bildenden Stabchen-bakterien (Aerobactereae Pribram 1929 em.)" Ergeb. Hyg. Bakteriol. (1935) 17:175-230. [No PubMed record available.]

ICSB (1991b)

ICSB, Subcommittee on Pasteurellaceae and Related Organisms: "Minutes on the meeting, 17 September 1990, Osaka, Japan." Int. J. Syst. Bacteriol. (1991) 41:592. (Note: in minute 8 -- "Pasteurella lymphagitidis has been shown by De Ley et al. to belong in the family Enterobactericeae and should not be included in the Pasteurellaceae.") [No PubMed record available.]

Migula W (1900)

Migula, W. System der Bakterien, Vol. 2. (1900) Gustav Fischer, Jena. [No PubMed record available.]

Pfeiffer A (1889)

Pfeiffer, A. Ueber die bacillare Pseudotuberkulose bei Nagethieren. (1889) Thieme, Leipzig.

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Sneath PHA & Stevens M (1990)

Sneath, P.H., and Stevens, M. "Actinobacillus rossii sp. nov., Actinobacillus seminis sp. nov., nom. rev., Pasteurella bettii sp. nov., Pasteurella lymphangitidis sp. nov., Pasteurella mairi sp. nov., and Pasteurella trehalosi sp. nov." Int. J. Syst. Bacteriol. (1990) 40:148-153.

Smith JE & Thal E (1965)

Smith, J.E., and Thal, E. "A taxonomic study of the genus Pasteurella using a numerical technique." Acta Pathol. Microbiol. Scand. (1965) 64:213-223.

Topley WWC & Wilson GS (1929)

Topley, W.W.C., and Wilson, G.S. The Principles of Bacteriology and Immunity, 1st ed. (1929) Edward Arnold and Co., London, pp. 1-587. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Yersinia pseudotuberculosis	meta-databases	BacDive
22 records from this provider	organism-specific	BioCyc
GOLD: 12 Organisms	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Yersinia pseudotuberculosis	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
70 records from this provider	organism-specific	Integrated Microbial Genomes
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
Yersinia pseudotuberculosis \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry
Wikipedia	taxonomy/phylogenetic	iPhylo

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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