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Taxonomy browser (Vibrio cholerae)

Vibrio cholerae

Taxonomy ID: 666 (for references in articles please use NCBI:txid666)
current name
Vibrio cholerae Pacini 1854
type strain of Vibrio cholerae: ATCC:14035, CCUG:9118 A, CECT:514, CIP:62.13, NCTC:8021
homotypic synonym:
"Vibrio cholera" (sic) Pacini 1854, effective name 1)
"Bacillus cholerae" (Pacini 1854) Trevisan 1884, effective name 2)
"Spirillum cholerae" (Pacini 1854) Mac1889, effective name 3)
"Liquidivibrio cholerae" (Pacini 1854) Orla-Jensen 1909, effective name 4)
NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Host: bacteria
Other names:
heterotypic synonym
"Bacillo virgola del Koch" Trevisan 1884, effective name 5)
heterotypic synonym
"Bacillus cholerae-asiaticae" Trevisan 1884, effective name 6)
heterotypic synonym
"Kommabacillus" Koch 1884, effective name 7)
heterotypic synonym
"Pacinia cholerae-asiaticae" (Trevisan 1884) Trevisan 1885, effective name 8)
heterotypic synonym
"Spirillum cholerae-asiaticae" (Trevisan 1884) Zopf 1885, effective name 9)
heterotypic synonym
"Vibrio cholerae-asiaticae" (Trevisan 1884) Pfeiffer 1896, effective name 10)
heterotypic synonym
"Vibrio comma" (Schroeter 1886) Blanchard 1906, effective name 11)
homotypic synonym:
"Microspira comma" Schroeter 1886, effective name 12)
heterotypic synonym
Vibrio cholerae biovar albensis
heterotypic synonym
Vibrio cholerae bv. albensis
heterotypic synonym
Vibrio albensis Lehmann and Neumann 1896
type strain of Vibrio albensis: ATCC:14547, CCUG:48664, BCCM/LMG:4406, NCIMB:41
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 810,177 668,190 460
Protein 4,857,091 4,104,102 -
Structure 735 371 -
Genome 1 1 -
Popset 335 320 -
Conserved Domains 6 5 -
GEO Datasets 1,629 1,297 -
PubMed Central 26,264 26,264 -
Gene 51,166 4,255 -
SRA Experiments 16,928 14,367 -
Protein Clusters 5,560 5,560 -
Identical Protein Groups 1,114,133 1,081,913 -
BioProject 1,083 763 -
BioSample 27,040 24,396 8
Assembly 10,258 9,331 -
Genetic Testing Registry 2 2 -
PubChem BioAssay 315 292 -
Taxonomy 281 1 -


Comments and References:

Hendrie MS et al. (1970)
Hendrie, M.S., Hodgkiss, W., and Shewan, J.M. "The identification, taxonomy and classification of luminous bacteria." J. Gen. Microbiol. (1970) 64:151-169. [No PubMed record available.]
Lehmann KB & Neumann R (1896)
Lehman, K.B., and Neumann, R. Atlas und Grundriss der Bakeriologie und Lehrbuch der speziellen bakteriologischen Diagnositk. 1st Ed., (1896) J.F. Lehmann, Munchen. [No PubMed record available.]
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Reichelt JL et al. (1976)
Reichelt, J.L., Baumann, P., and Baumann, L. "Study of genetic relationships among marine species of the genera Beneckea and Photobacterium by means of in vitro DNA/DNA hybridization." Arch. Microbiol. (1976) 110:101-120.
Nandi S et al. (1997)
Nandi, S., Khetawat, G., Sengupta, S., Majumder, R., Kar, S., Bhadra, R.K., Roychoudhury, S., and Das, J. "Rearrangements in the genomes of Vibrio cholerae strains belonging to different serovars and biovars." Int. J. Syst. Bacteriol. (1997) 47:858-862.
Lapage SP et al. (1992) (reference with type strain information)
Lapage, S.P., Sneath, P.H.A., Lessel, E.F., Skerman, V.B.D., Seeliger, H.P.R., and Clark, W.A. "International Code of Nomenclature of Bacteria (1990 revision)." American Society for Microbiology, Washington, D.C. (1992). [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Vibrio cholerae meta-databases BacDive
34 records from this provider organism-specific BioCyc
dryaddb supplemental materials Dryad Digital Repository
Vibrio cholerae Pacini 1854 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
41 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Vibrio cholerae culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
252 records from this provider organism-specific Integrated Microbial Genomes
Vibrio cholerae taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Vibrio cholerae Pacini, 1854 taxonomy/phylogenetic Ocean Biogeographic Information System
4 records from this provider taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Vibrio cholerae taxonomy/phylogenetic TreeBase
Vibrio cholerae Pacini, 1854 taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

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