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Taxonomy browser (Porphyromonas gingivalis)

Porphyromonas gingivalis

Taxonomy ID: 837 (for references in articles please use NCBI:txid837)
current name
Porphyromonas gingivalis (Coykendall et al. 1980) Shah and Collins 1988 emend. Hahnke et al. 2016
basionym:
Bacteroides gingivalis Coykendall et al. 1980
type strain of Bacteroides gingivalis: ATCC:33277, CCUG:25893, CCUG:25928, CIP:103683, DSM:20709, JCM:12257, NCTC:11834, personal::2561
NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( abbreviated )
Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 21,896 16,235 62
Protein 210,713 167,890 -
Structure 157 69 -
Genome 1 1 -
Popset 15 15 -
Conserved Domains 4 3 -
GEO Datasets 593 432 -
PubMed Central 14,961 14,961 -
Gene 9,081 1 -
SRA Experiments 645 495 -
Protein Clusters 1,779 1,779 -
Identical Protein Groups 68,643 61,695 -
BioProject 150 97 -
BioSample 783 629 70
Assembly 112 92 3
PubChem BioAssay 187 155 -
Taxonomy 21 1 -

Comments and References:

Coykendall AL et al. (1980)
Coykendall, A.L., Kaczmarek, F.S., and Slots, J. "Genetic heterogeneity in Bacteroides asaccharolyticus (Holdeman and Moore 1970) Finegold and Barnes 1977 (Approved Lists, 1980) and proposal of Bacteroides gingivalis sp. nov. and Bacteroides macacae (Slots and Genco) comb. nov." Int. J. Syst. Bacteriol. (1980) 30:559-564. [No PubMed record available.]
Hahnke RL et al. (2016)
Hahnke, R.L., Meier-Kolthoff, J.P., García-López, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Göker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.
List of Changes in Taxonomic Opinion No. 26 (2017)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67(7):2081-2086.
Shah HN & Collins MD (1988)
Shah H.N., and Collins M.D. "Proposal for reclassification of Bacteroides asaccharolyticus, Bacteroides gingivalis, and Bacteroides endodontalis in a new genus, Porphyromonas." Int. J. Syst. Bacteriol., (1988) 38:128-131. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Porphyromonas gingivalis meta-databases BacDive
Porphyromonas gingivalis (Coykendall et al. 1980) Shah and Collins 1988 taxonomy/phylogenetic Encyclopedia of life
15 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Porphyromonas gingivalis culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
42 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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