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Taxonomy browser (Saccharina japonica)

Saccharina japonica

Taxonomy ID: 88149 (for references in articles please use NCBI:txid88149)
current name
Saccharina japonica (Areschoug) Lane, Mayes, Druehl & Saunders, 2006
basionym:
Laminaria japonica Areschoug, 1851
NCBI BLAST name: brown algae
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Sar; Stramenopiles; Ochrophyta; PX clade; Phaeophyceae; Laminariales; Laminariaceae; Saccharina
   Entrez records   
Database name Subtree links Direct links
Nucleotide 1,646 1,642
Protein 2,150 1,971
Genome 1 1
Popset 24 24
GEO Datasets 18 18
PubMed Central 1,638 1,638
Gene 240 240
SRA Experiments 646 646
Identical Protein Groups 403 403
BioProject 36 35
BioSample 438 438
Assembly 2 2
Taxonomy 2 1

Comments and References:

image:Saccharina japonica

Genome Information

Go to NCBI genomic BLAST page for Saccharina japonica

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Saccharina japonica taxonomy/phylogenetic AlgaeBase
dryaddb supplemental materials Dryad Digital Repository
Laminaria japonica Areschoug taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0145232 organism-specific Genomes On Line Database
2 records from this provider taxonomy/phylogenetic Ocean Biogeographic Information System
WebScipio: Saccharina japonica organism-specific WebScipio - eukaryotic gene identification
2 records from this provider taxonomy/phylogenetic World Register of Marine Species
diArk: Saccharina japonica organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

To hide organism modifiers click here
strain
002 [1] 003 [3 3] 017 [1] 018 [1]
1170 [1] 860 [19 1 18] H10 [1 139] L049-female [1 1]
L060-male [1 1] LDF01 [1 1] LDF01-female [2 1 2] LDF01-male [1 1]
Rongfu [2] Zhongke 2 [16 17]
cultivar
901 cultivar 901 [179 4 179] of Saccharina japonica cultivar 901 Broad and thin type [1 1] Dongfang No. 6 [1 38] Dongfang No.7 [1 139]
Fujian [1 139] HaiJia No.1 [1 139] HaiKe No.1 [1 139] HuangGuan No. 1 [2 177]
HuangGuan No.1 [2 177] Ja [1 1 1 10] L88-1-1 [1 1] Long and narrow shape [2 2]
NO.1170 [1 1] Rongcheng [1 1] Rongyuanyuan-1 [1 1] Taizo Motomura [1 1]
ZaoHouCheng Z-1-5 [2 2] Zaoshu [1 139] Zhaohoucheng [1] Zhaohoucheng 5-1 [1 2]
Zhaohoucheng 5-2 [1 2]
isolate
008082 [1 1 1] 019780 [1 1 1] 1-1 [2 2] 1-10 [2 2]
1-2 [2 2] 1-3 [2 2] 1-4 [2 2] 1-5 [2 1]
1-6 [2 2] 1-7 [2 2] 1-8 [2 2] 1-9 [2 2]
1A [1 1 1] 1B [1 1 1] 2-1 [2 2] 2-10 [1 2]
2-2 [2 2] 2-3 [2 2] 2-4 [2 2] 2-5 [2 2]
2-6 [2 2] 2-7 [1 2] 2-8 [1 2] 2-9 [1 2]
2A [1 1 1] 2B [1 1 1] 3-1 [1] 3-10 [1 2]
3-2 [1] 3-3 [2 2] 3-4 [2 2] 3-5 [2 2]
3-6 [1] 3-7 [1 2] 3-8 [1 2] 3-9 [1 2]
3A [1 1 1] 3B [1 1 1] BAC652-P6 [1] BAC669-A11 [1]
C-34439.49914 [1 1 1] C-34439.51327 [1 1 1] C-34439.51328 [1 1 1] C-34439.53831 [1 1 1]
C1 [1 1 2] C10 [1 1 2] C11 [1 1 2] C12 [1 1 2]
C13 [1 1 2] C14 [1 1 2] C15 [1 1 2] C16 [1 1 2]
C17 [1 1 2] C18 [1 1 2] C19 [1 1 2] C2 [1 1 2]
C20 [1 1 2] C21 [1 1 2] C22 [1 1 2] C23 [1 1 2]
C24 [1 1 2] C25 [1 1 2] C26 [1 1 2] C27 [1 1 2]
C28 [1 1 2] C29 [1 1 2] C3 [1 1 2] C30 [1 1 2]
C31 [1 2] C32 [1 2] C33 [1 2] C34 [1 2]
C35 [1 2] C36 [1 2] C37 [1 2] C38 [1 2]
C39 [1 2] C4 [1 1 2] C40 [1 2] C41 [1 2]
C42 [1 2] C43 [1 2] C44 [1 2] C45 [1 2]
C46 [1 2] C47 [1 2] C48 [1 2] C49 [1 2]
C5 [1 1 2] C50 [1 2] C51 [1 2] C52 [1 2]
C6 [1 1 1 2 1] C7 [1 1 2] C8 [1 1 2] C9 [1 1 2]
DY10 [1 1 1] DZ5 [1 1 1] FU2 [1 1] Fujian [1 38]
GENE_000958 [1 1 1] GENE_003591 [1 1 1] GENE_003790 [1 1 1] GENE_004442 [1 1 1]
GENE_006883 [1 1 1] GENE_007480 [1 1 1] GENE_010113 [1 1 1] GENE_011072 [1 1 1]
GENE_011958 [1 1 1] GENE_013030 [1 1 1] GENE_013031 [1 1 1] GENE_013032 [1 1 1]
GENE_015111 [1 1 1] GENE_015113 [1 1 1] GENE_015114 [1 1 1] GENE_015124 [1 1 1]
GENE_015125 [1 1 1] GENE_015126 [1 1 1] GENE_015127 [1 1 1] GENE_018185 [1 1 1]
GENE_018444 [1 1 1] GENE_020841 [1 1 1] GENE_020842 [1 1 1] GENE_020843 [1 1 1]
GENE_021351 [1 1 1] GENE_022334 [1 1 1] GENE_023686 [1 1 1] GENE_023690 [1 1 1]
GK4 [1 1] GS1 [1 1 1] H10 [2 2] Hakodate [1 1]
IA6 [1 1] JD1 [1] KG14 [1 1 1] KU-508 [1 1]
LK18 [1 1 1] LK2 [1 1 1] LK4 [1 1 1] LON-07 [3 3 3]
LON-1 [3 3 3] LON-2 [3 3 3] MO1 [1 1] MO41 [1 1]
NP28 [1 1] OGZM_2075556 [1 1] QDTV_2075130 [1 1] RE7 [1 1]
RL9 [1 1 1] RT4 [1 1] RV1 [1 1 1] RZ12 [1 1 1]
RZ18 [1 1 1] SA19 [1 1] SH21 [1 1 1] SH6 [1 1 1]
SJAPO [2 76] SO14 [1 1] SO3 [1 1] SRSQ-2012890 [1 1]
SRSQ-2017924 [1 1] SRSQ-2018139 [1] SRSQ-2019257 [1 1] SRSQ-2019538 [1]
SRSQ-2020320 [1 1] SRSQ-2097745 [1 1] SRSQ-2097889 [1 1] SRSQ-2097909 [1 1]
SRSQ-2098128 [1 1] SRSQ-2098596 [1 1] SRSQ-2098614 [1 1] SRSQ_2009231 [1 1]
SRSQ_2098493 [1 1] ST26 [1 1 1] SW12 [1 1 1] SW18 [1 1 1]
Sample No.1 [5] Sample No.2 [3] Sample No.3 [1] Sample No.4 [1]
Sample No.5 [1] Sj-0001 [3 1] Sj-00010 [3 1] Sj-00011 [3 1]
Sj-0002 [3 1] Sj-0003 [3 1] Sj-0004 [3 1] Sj-0005 [3 1]
Sj-0006 [3 1] Sj-0007 [3 1] Sj-0008 [3 1] Sj-0009 [3 1]
TKM201445 [1] TYP-07 [3 3 3] TYP-1 [3 3 3] TYP-2 [3 3 3]
TYP-3 [3 3 3] TYP-4 [3 3 3] TYPA-1 [3 3 3] TYPA-2 [3 3 3]
TYPA-3 [3 3 3] TYPA-4 [3 3 3] TYPF-1 [3 3 3] TYPF-2 [3 3 3]
TYPF-3 [3 3 3] TYPF-4 [3 3 3] TYPW [3 3 3] UT17 [1 1]
W-S-II22 [1 1 1] WB-S-II15 [1 1 1] XLOC_014659 [1 1 1] XLOC_028480 [1 1 1]
XLOC_034827 [1 1 1] XLOC_036550 [1 1 1] YL [1 1] YS3 [1 1 1]
YS7 [1 1 1] ZC2 [1 1 1] ZC5 [1 1 1] Zaohoucheng [1 38]
mbccc100 [1 1] mbccc70 [1 1 1] mt11 [1 2] mt12 [1 2]
mt21 [1 1] mt22 [1 1]
specimen-voucher
Chungnam National University [2 2 2] Institute of Oceanology, Chinese Academy of Sciences [5] KU-d12322 (Kobe University, Kawai lab.) [1] KU-d12323 (Kobe University, Kawai lab.) [1]
KU:508 [1 1] RC20120925.81 [2 2 1] TKM-1-000097 [1] WH20130326.171 [1 2]
culture-collection
KU-MACC:KU-508 [11 10]


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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