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Taxonomy browser (Liliopsida)

Liliopsida

Taxonomy ID: 4447 (for references in articles please use NCBI:txid4447)
current name
Liliopsida
Genbank common name: monocotyledons
NCBI BLAST name: monocots
Rank: clade
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Monocotyledoneae
common name(s) monocots
blast name
monocots
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 32,394,399 -
Protein 6,587,342 -
Structure 1,310 -
Genome 273 -
Popset 14,693 1,308
Conserved Domains 51 -
GEO Datasets 68,055 -
PubMed Central 228,106 386
Gene 1,878,477 -
HomoloGene 9,787 -
SRA Experiments 813,668 1
GEO Profiles 779,011 -
Protein Clusters 21,298 -
Identical Protein Groups 4,329,444 -
BioProject 48,705 -
BioSample 686,560 1
Assembly 1,104 -
PubChem BioAssay 4,209 -
Taxonomy 50,791 1

Comments and References:

APG IV (2016), doi:10.1111/boj.12385
The Angiosperm Phylogeny Group. 2016. An update of the Angiosperm Phylogeny Group classification of the orders and families of flowering plants: APG IV. Botanical Journal of the Linnean Society 181: 1-20.
Zeng L et al. 2014, doi:10.1038/ncomms5956
Zeng L, Zhang Q, Sun R, Kong H, Zhang N, Ma H. 2014. Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of divergence times. Nature Communications 5: 4956.
Qiu Y-L et al. 2005, doi:10.1086/431800
Qiu Y-L, Dombrovska O, Lee J, Li L, Whitlock BA, Bernasconi-Quadroni F, Rest JS, Davis CC, Borsch T, Hilu KW, Renner SS, Soltis DE, Soltis PS, Zanis MJ, Cannone JJ, Gutell RR, Powell M, Savolainen V, Chatrou LW & Chase MW. 2005. Phylogenetic analyses of basal angiosperms based on nine plastid, mitochondrial, and nuclear genes. International Journal of Plant Sciences 166: 815-842.
Davis JI et al. 2004
Davis JI and 12 others. 2004. A phylogeny of the monocots, as inferred from rbcL and atpA sequence variation, and a comparison of methods for calculating jackknife and bootstrap values. Systematic Botany 29(3): 467-510.
Tamura MN et al. 2004
Tamura MN, Fuse S, Azuma H & Hasebe M. 2004. Biosystematic studies on the family Tofieldiaceae. I. Phylogeny and circumscription of the family inferred from DNA sequences of matK and rbcL. Plant Biology 6: 562-657.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Liliopsida taxonomy taxonomy/phylogenetic Arctos Specimen Database
2 records from this provider taxonomy/phylogenetic Barcodes of Life
Liliopsida taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Liliopsida taxonomy/phylogenetic Lifemap
Liliopsida images MorphBank
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Monocotyledons taxonomy/phylogenetic Tree of Life
2 records from provider taxonomy/phylogenetic TreeBase
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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