Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM279542v1

Organism name:: Conservatibacter flavescens (g-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: 7.4
BioSample:: SAMN08040642
BioProject:: PRJNA419029
Submitter:: University of Copenhagen
Date:: 2017/11/26
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_002795425.1 (latest)
RefSeq assembly accession:: GCF_002795425.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: PHHA01
Assembly method:: CLC NGS Cell v. 8
Expected final version:: yes
Genome coverage:: 82.0x
Sequencing technology:: Illumina MiSeq

IDs: 1451331 [UID] 5681038 [GenBank] 5685198 [RefSeq]

See Genome Information for Conservatibacter flavescens

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002795425.1	=	GCF_002795425.1	ASM279542v1	Contig	Latest GenBank, Latest RefSeq

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Henrik Christensen, Stigbojlen 4, 1879 Frederiksberg, Denmark.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::11/21/2017 19:12:22
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,505
CDS (total)::2,451
Genes (coding)::2,417
CDS (coding)::2,417
Genes (RNA)::54
rRNAs::2, 2, 1 (5S, 16S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::2, 1 (16S, 23S)
tRNAs::45
ncRNAs::4
Pseudo Genes (total)::34
Pseudo Genes (ambiguous residues)::0 of 34
Pseudo Genes (frameshifted)::14 of 34
Pseudo Genes (incomplete)::14 of 34
Pseudo Genes (internal stop)::11 of 34
Pseudo Genes (multiple problems)::5 of 34
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,607,477
Total ungapped length	2,607,477
Number of contigs	49
Contig N50	124,117
Contig L50	6
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	49

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	84.67	2.45	3.20

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM279542v1

See Genome Information for Conservatibacter flavescens

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result