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UVic_Lsal_1.1

  • Anomalous assembly.
Organism name:
Lepeophtheirus salmonis (salmon louse)
Isolate:
Lsal2020
Sex:
female
BioSample:
SAMN16628719
BioProject:
PRJNA673901
Submitter:
University of Victoria
Date:
2020/12/16
Release type:
minor
Assembly level:
Chromosome
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_016086655.2 (replaced)
RefSeq assembly accession:
GCF_016086655.2 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version
WGS Project:
JADKYV01
Assembly method:
Flye v. 2.7b-b1528; Racon v. v1.4.16; Pilon v. 1.22; Chromonomer v. 1.10
Expected final version:
yes
Genome coverage:
45.0x
Sequencing technology:
Oxford Nanopore MinION; Illumina

IDs: 9686591 [UID] 25905268 [GenBank] 25931088 [RefSeq]

See Genome Information for Lepeophtheirus salmonis

There are 6 assemblies for this organism

See more

History (Show revision history)

Comment

In March 2021 184 sequences of the JADKYV01000000 project were suppressed because they are contaminants
In November 2021 1767 more sequences were suppressed because they were found to be contaminants

Global statistics

Total sequence length650,284,782
Total ungapped length650,224,336
Gaps between scaffolds0
Number of scaffolds9,832
Scaffold N5048,457,437
Scaffold L506
Number of contigs10,437
Contig N504,499,712
Contig L5044
Total number of chromosomes and plasmids15
Number of component sequences (WGS or clone)10,435

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_016086685.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM027723.1=NC_052131.10
Chromosome 2CM027724.1=NC_052132.10
Chromosome 3CM027725.1=NC_052133.10
Chromosome 4CM027726.1=NC_052134.10
Chromosome 5CM027727.1=NC_052135.10
Chromosome 6CM027728.1=NC_052136.10
Chromosome 7CM027729.1=NC_052137.10
Chromosome 8CM027730.1=NC_052138.10
Chromosome 9CM027731.1=NC_052139.10
Chromosome 10CM027732.1=NC_052140.10
Chromosome 11CM027733.1=NC_052141.10
Chromosome 12CM027734.1=NC_052142.10
Chromosome 13CM027735.1=NC_052143.10
Chromosome 14CM027736.1=NC_052144.10
Chromosome 15CM027737.1=NC_052145.10
unplacedn/an/an/a9,817

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All650,284,7829,832650,224,33648,457,4376050
Chromosome 156,000,612155,995,61256,000,612500
Chromosome 241,334,738141,330,33841,334,738440
Chromosome 350,820,592150,818,09250,820,592250
Chromosome 453,604,425153,601,12553,604,425330
Chromosome 573,492,277173,488,47773,492,277380
Chromosome 659,542,840159,539,14059,542,840370
Chromosome 742,125,153142,122,65342,125,153250
Chromosome 839,162,385139,156,18539,162,385620
Chromosome 931,879,791131,873,39131,879,791640
Chromosome 1024,316,617124,312,61724,316,617400
Chromosome 1122,450,802122,445,40222,450,802540
Chromosome 1213,539,929113,538,22913,539,929170
Chromosome 1348,457,437148,452,63748,457,437480
Chromosome 1444,290,828144,286,12844,290,828470
Chromosome 1524,226,409124,224,50924,226,409190
unplaced25,039,9479,81725,039,8014,83220