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PHO1.0

  • Anomalous assembly.
Organism name:
Pantholops hodgsonii (chiru)
Sex:
male
BioSample:
SAMN00990743
BioProject:
PRJNA72465
Submitter:
BGI
Date:
2013/05/28
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_000400835.1 (latest)
RefSeq assembly accession:
GCF_000400835.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version
WGS Project:
AGTT01
Assembly method:
SOAPdenovo v. 2.1
Expected final version:
yes
Genome coverage:
67.0x
Sequencing technology:
Illumina

IDs: 693368 [UID] 693368 [GenBank] 827088 [RefSeq]

See Genome Information for Pantholops hodgsonii

History (Show revision history)

Comment

Global statistics

Total sequence length2,696,869,832
Total ungapped length2,507,969,940
Gaps between scaffolds0
Number of scaffolds15,058
Scaffold N502,772,860
Scaffold L50295
Number of contigs298,127
Contig N5018,674
Contig L5039,425
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)298,127

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,696,869,83215,0582,507,969,9402,772,860283,0690