U.S. flag

An official website of the United States government

Format
Items per page
Sort by

Send to:

Choose Destination

Download Assemblies



Taxonomy

Mus musculus

House mouse (Mus musculus) is a species of rodent in the family Muridae that is widely used as an experimental model organism.

Taxonomy ID: 10090

Search results

Items: 1 to 20 of 66

  • Filters activated: Latest, Exclude anomalous. Clear all to show 99 items.
1.

GRCm39

Genome Reference Consortium Mouse Build 39

Organism:
Mus musculus (house mouse)
Infraspecific name:
Strain: C57BL/6J
Submitter:
Genome Reference Consortium
Date:
2020/06/24
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
reference genome
Synonyms:
mm39
GenBank assembly accession:
GCA_000001635.9 (latest)
RefSeq assembly accession:
GCF_000001635.27 (latest)
IDs:
7358741 [UID] 20371618 [GenBank] 20412818 [RefSeq]
2.

C57BL_6J_T2T_v1

Organism:
Mus musculus (house mouse)
Infraspecific name:
Strain: C57BL_6J
Submitter:
EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:
2024/06/23
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_964188535.1 (latest)
RefSeq assembly accession:
n/a
IDs:
22928881 [UID] 59767058 [GenBank]
3.

DBA_2J_v3

Organism:
Mus musculus (house mouse)
Submitter:
EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:
2022/07/01
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_921998315.2 (latest)
RefSeq assembly accession:
n/a
IDs:
13301091 [UID] 34743968 [GenBank]
4.

NEI_Mmus_1.0

Organism:
Mus musculus (house mouse)
Infraspecific name:
Strain: B10.RIII
Sex:
female
Submitter:
National Eye Institute
Date:
2023/06/13
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_030265425.1 (latest)
RefSeq assembly accession:
n/a
IDs:
16861651 [UID] 43310938 [GenBank]
5.

mMusMuc1.1

Organism:
Mus musculus (house mouse)
Submitter:
WELLCOME SANGER INSTITUTE
Date:
2023/04/08
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_949316315.1 (latest)
RefSeq assembly accession:
n/a
IDs:
16568611 [UID] 42617258 [GenBank]
6.

NOD_SCID

Organism:
Mus musculus (house mouse)
Infraspecific name:
Strain: NOD/SCID
Sex:
female
Submitter:
JSR Life Sciences
Date:
2023/09/22
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_031763685.1 (latest)
RefSeq assembly accession:
n/a
IDs:
18738711 [UID] 47846148 [GenBank]
7.

BALB_cJ_v3

Organism:
Mus musculus (house mouse)
Submitter:
EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:
2022/07/01
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_921997145.2 (latest)
RefSeq assembly accession:
n/a
IDs:
13301101 [UID] 34743998 [GenBank]
8.

NZO_HlLtJ_v3

Organism:
Mus musculus (house mouse)
Submitter:
EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:
2022/12/18
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_947593165.1 (latest)
RefSeq assembly accession:
n/a
IDs:
15445501 [UID] 39730068 [GenBank]
9.

BALBC_Nude

Organism:
Mus musculus (house mouse)
Infraspecific name:
Strain: BALB/c Nude
Sex:
female
Submitter:
JSR Life Sciences
Date:
2023/09/22
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_031761455.1 (latest)
RefSeq assembly accession:
n/a
IDs:
18738731 [UID] 47846178 [GenBank]
10.

LP_J_v3

Organism:
Mus musculus (house mouse)
Submitter:
EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:
2022/12/18
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_947599735.1 (latest)
RefSeq assembly accession:
n/a
IDs:
15445491 [UID] 39730038 [GenBank]
11.

A_J_v3

Organism:
Mus musculus (house mouse)
Submitter:
EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:
2022/06/30
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_921998355.2 (latest)
RefSeq assembly accession:
n/a
IDs:
13301041 [UID] 34743838 [GenBank]
12.

CBA_J_v3

Organism:
Mus musculus (house mouse)
Submitter:
EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:
2022/06/30
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_921998905.2 (latest)
RefSeq assembly accession:
n/a
IDs:
13301021 [UID] 34743758 [GenBank]
13.

C3H_HeJ_v3

Organism:
Mus musculus (house mouse)
Submitter:
EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:
2022/07/01
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_921997125.2 (latest)
RefSeq assembly accession:
n/a
IDs:
13300971 [UID] 34743608 [GenBank]
14.

C57BL_6NJ_v3

Organism:
Mus musculus (house mouse)
Submitter:
EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:
2022/07/01
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_921999865.2 (latest)
RefSeq assembly accession:
n/a
IDs:
13300991 [UID] 34743668 [GenBank]
15.

NOD_ShiLtJ_v3

Organism:
Mus musculus (house mouse)
Submitter:
EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:
2022/07/01
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_921998325.2 (latest)
RefSeq assembly accession:
n/a
IDs:
13301081 [UID] 34743938 [GenBank]
16.

129S1_SvImJ_v3

Organism:
Mus musculus (house mouse)
Submitter:
EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:
2022/07/01
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_921998555.2 (latest)
RefSeq assembly accession:
n/a
IDs:
13301051 [UID] 34743848 [GenBank]
17.

PWK_PhJ_v3

Organism:
Mus musculus musculus (eastern European house mouse)
Submitter:
EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:
2022/07/01
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_921998335.2 (latest)
RefSeq assembly accession:
n/a
IDs:
13301071 [UID] 34743908 [GenBank]
18.

JF1_MsJ_v3

Organism:
Mus musculus molossinus (Japanese wild mouse)
Submitter:
EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:
2022/07/01
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_921999095.2 (latest)
RefSeq assembly accession:
n/a
IDs:
13301001 [UID] 34743698 [GenBank]
19.

ASM2923726v1

Organism:
Mus musculus (house mouse)
Infraspecific name:
Strain: CAST/EiJ
Sex:
female
Submitter:
The Jackson Laboratory for Genomic Medicine
Date:
2023/03/17
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_029237265.1 (latest)
RefSeq assembly accession:
n/a
IDs:
16188821 [UID] 41504268 [GenBank]
20.

ASM2923370v1

Organism:
Mus musculus (house mouse)
Infraspecific name:
Strain: NZO/HILtJ
Sex:
female
Submitter:
The Jackson Laboratory for Genomic Medicine
Date:
2023/03/17
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_029233705.1 (latest)
RefSeq assembly accession:
n/a
IDs:
16188261 [UID] 41500428 [GenBank]
Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

NCBI Datasets

Download a genome dataset including genome, transcript and protein sequence, annotation and a data report. Learn more

Your selected data and a detailed data report will be downloaded as a ZIP file.

Select up to 200 genome assemblies from the search results using the checkboxes next to the assembly names.

Find related data

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...