Genome assembly NSPWAT
reference

FTP
Actions
NCBI RefSeq assembly
GCF_946900835.1
Submitted GenBank assembly
GCA_946900835.1
Taxon
Nitrospina watsonii
Strain
347
Isolate
Nitrospina watsonii
Relation to type material
assembly from type material
Submitter
RADBOUD UNIVERSITY, Department Microbiology
Date
Jan 14, 2023

Assembly statistics

RefSeqGenBank
Genome size3 Mb3 Mb
Total ungapped length3 Mb3 Mb
Number of chromosomes11
Number of scaffolds11
Scaffold N503 Mb3 Mb
Scaffold L5011
Number of contigs11
Contig N503 Mb3 Mb
Contig L5011
GC percent5757
Genome coverage54.0x54.0x
Assembly levelComplete GenomeComplete Genome
View sequencesview RefSeq sequencesview GenBank sequences

Sample details

BioSample ID
SAMEA111355068
Description
Nitrospina watsonii 347 genome
Comment
Complete genome of Nitrospina watsonii, isolated by Spieck et al. 2014 (doi: 10.1016/j.syapm.2013.12.005)
Submitter
EBI
ENA-CHECKLIST
ERC000011
ENA-FIRST-PUBLIC
Jan 12, 2023
ENA-LAST-UPDATE
Jan 12, 2023
External Id
SAMEA111355068
INSDC center alias
RADBOUD UNIVERSITY, Department Microbiology
INSDC center name
RADBOUD UNIVERSITY, Department Microbiology
INSDC first public
2023-01-12T12:20:58Z
INSDC last update
2023-01-12T12:20:58Z
INSDC status
public
Submitter Id
NSPWAT
Isolate
Nitrospina watsonii
Sample name
NSPWAT
Scientific name
Nitrospina watsonii
Strain
347
Type-material
type strain of Nitrospina watsonii
SRA
ERS13452602
Models
Generic
Package
Generic.1.0
Submission date
2023-01-15T17:05:46.910
Publication date
2023-01-12T00:00:00.000
Last updated
2023-04-12T16:03:01.000

Assembly methods

Sequencing technology
Illumina MiSeq, Nanopore
Assembly method
canu v.1.8, unicycler v0.4.4

Additional genomes

Browse all Nitrospina watsonii genomes (1)

BioProject

PRJEB56043

Complete genome sequence of Nitrospina watsonii Nb-347 isolated from the Black Sea

Publications

Showing 1 of 1

View in PubMed

Annotation details

RefSeqGenBank
ProviderNCBI RefSeqRADBOUD UNIVERSITY, Department Microbiology
NameGCF_946900835.1-RS_2024_08_25Annotation submitted by RADBOUD UNIVERSITY, Department Microbiology
DateAug 25, 2024Jan 14, 2023
Genes2,8192,950
Protein-coding2,7632,893
Software version6.8

About PGAP

The NCBI Prokaryotic Genome Annotation Pipeline (PGAP) uses multiple approaches to predict protein-coding and RNA genes and other functional elements directly from sequence.

Continue reading

Quality analysis

CheckM analysis (v1.2.3)

Completeness: 98.28% (100th Percentile)

Contamination: 1.72%

Calculated on the Prokaryotic Genome Annotation Pipeline (PGAP) gene set with the Bacteria CheckM marker set. For more information on CheckM, see Parks, et al. Genome Res (2015).

Taxonomy check

Taxonomy check status
OK
Best match status
below_threshold_mismatch
Submitted organism name
Nitrospina watsonii
Submitted species name
Nitrospina watsonii
Category
type
Comment
Assembly is the type_strain, mismatch is within genus and expected

Average Nucleotide Identity (ANI) match details

Best match type-strain for submitted organismBest match type-strain
Type assembly

n/a

GCA_000341545.2
Organism name

n/a

Nitrospina gracilis
Type category

n/a

type
ANI

n/a

82.54%
Assembly coverage

n/a

57.44%
Type assembly coverage

n/a

56.4%

Chromosomes

Chromosome
GenBank
RefSeq
Size (bp)
GC content (%)
Unlocalized count
Action
chromosomeOX336137.1NZ_OX336137.13,011,914570

Revision history

This record has not been revised

GenBank
RefSeq
Name
Level
Date
Action
GCA_946900835.1GCF_946900835.1NSPWATComplete GenomeJan 14, 2023