txid7955[Organism:noexp] - Assembly - NCBI

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Taxonomy

Danio rerio

Zebrafish (Danio rerio) is a species of bony fish in the family Danionidae that is widely used as an experimental model organism.

Taxonomy ID: 7955

Genomes Genes Genome Data Viewer

Search results

Items: 18

Filters activated: Latest, Exclude anomalous. Clear all to show 26 items.

Select item 11046211.

Genome Reference Consortium Zebrafish Build 11

Organism:: Danio rerio (zebrafish)

Infraspecific name:: Strain: Tuebingen

Submitter:: Genome Reference Consortium

Date:: 2017/05/09

Assembly type:: haploid-with-alt-loci

Assembly level:: Chromosome

Genome representation:: full

RefSeq category:: reference genome

Synonyms:: danRer11

GenBank assembly accession:: GCA_000002035.4 (latest)

RefSeq assembly accession:: GCF_000002035.6 (latest)

IDs:: 1104621 [UID] 4482478 [GenBank] 4514068 [RefSeq]

Select item 197606612.

Organism:: Danio rerio (zebrafish)

Infraspecific name:: Strain: Tubingen

Sex:: female

Submitter:: National Human Genome Research Institute

Date:: 2023/11/15

Assembly level:: Complete Genome

Genome representation:: full

GenBank assembly accession:: GCA_033170195.2 (latest)

RefSeq assembly accession:: n/a

IDs:: 19760661 [UID] 50161098 [GenBank]

Select item 100725413.

Organism:: Danio rerio (zebrafish)

Infraspecific name:: Strain: T5D

Submitter:: North Carolina State University

Date:: 2021/05/19

Assembly level:: Chromosome

Genome representation:: full

GenBank assembly accession:: GCA_018400075.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 10072541 [UID] 26781408 [GenBank]

Select item 110269914.

Organism:: Danio rerio (zebrafish)

Infraspecific name:: Strain: AB

Submitter:: Institute of Hydrobiology, Chinese Academy of Sciences

Date:: 2021/09/30

Assembly level:: Chromosome

Genome representation:: full

GenBank assembly accession:: GCA_020184715.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 11026991 [UID] 29146318 [GenBank]

Select item 131336915.

Organism:: Danio rerio (zebrafish)

Submitter:: WELLCOME SANGER INSTITUTE

Date:: 2022/06/24

Assembly type:: haploid (principal pseudohaplotype of diploid)

Assembly level:: Chromosome

Genome representation:: full

GenBank assembly accession:: GCA_944039275.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 13133691 [UID] 34364588 [GenBank]

Select item 73043516.

Organism:: Danio rerio (zebrafish)

Submitter:: SC

Date:: 2020/06/28

Assembly level:: Chromosome

Genome representation:: full

GenBank assembly accession:: GCA_903684865.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 7304351 [UID] 20180788 [GenBank]

Select item 79207917.

Organism:: Danio rerio (zebrafish)

Submitter:: SC

Date:: 2020/07/31

Assembly level:: Chromosome

Genome representation:: full

GenBank assembly accession:: GCA_903684855.2 (latest)

RefSeq assembly accession:: n/a

IDs:: 7920791 [UID] 21711168 [GenBank]

Select item 47912718.

Organism:: Danio rerio (zebrafish)

Infraspecific name:: Strain: AB

Sex:: male

Submitter:: Harvard University

Date:: 2019/10/07

Assembly level:: Chromosome

Genome representation:: full

GenBank assembly accession:: GCA_008692375.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 4791271 [UID] 14240208 [GenBank]

Select item 73183519.

Organism:: Danio rerio (zebrafish)

Submitter:: SC

Date:: 2020/06/28

Assembly level:: Chromosome

Genome representation:: full

GenBank assembly accession:: GCA_903798185.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 7318351 [UID] 20213498 [GenBank]

Select item 731845110.

Organism:: Danio rerio (zebrafish)

Infraspecific name:: Strain: Nadia (NA)

Submitter:: SC

Date:: 2020/06/27

Assembly level:: Chromosome

Genome representation:: full

GenBank assembly accession:: GCA_903798175.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 7318451 [UID] 20213698 [GenBank]

Select item 731824111.

Organism:: Danio rerio (zebrafish)

Infraspecific name:: Strain: Cooch Behar (CB)

Submitter:: SC

Date:: 2020/06/27

Assembly level:: Chromosome

Genome representation:: full

GenBank assembly accession:: GCA_903798165.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 7318241 [UID] 20213238 [GenBank]

Select item 1094597112.

Organism:: Danio rerio (zebrafish)

Infraspecific name:: Strain: SAT

Sex:: pooled male and female

Submitter:: University of Kentucky

Date:: 2021/09/20

Assembly level:: Contig

Genome representation:: full

GenBank assembly accession:: GCA_020064045.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 10945971 [UID] 28942348 [GenBank]

Select item 1283746113.

Organism:: Danio rerio (zebrafish)

Infraspecific name:: Strain: CG2

Sex:: male

Submitter:: University of Chicago

Date:: 2022/05/25

Assembly level:: Scaffold

Genome representation:: full

GenBank assembly accession:: GCA_001483285.2 (latest)

RefSeq assembly accession:: n/a

IDs:: 12837461 [UID] 33530098 [GenBank]

Select item 1406320114.

Organism:: Danio rerio (zebrafish)

Infraspecific name:: Strain: CG1

Submitter:: University of Chicago

Date:: 2022/10/05

Assembly level:: Scaffold

Genome representation:: full

GenBank assembly accession:: GCA_025582565.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 14063201 [UID] 36516018 [GenBank]

Select item 21736115.

Organism:: Danio rerio (zebrafish)

Infraspecific name:: Strain: Tuebingen

Submitter:: Wellcome Trust Sanger Institute

Date:: 2010/05/24

Assembly level:: Scaffold

Genome representation:: full

GenBank assembly accession:: GCA_000767325.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 217361 [UID] 1362888 [GenBank]

Select item 60544116.

Zebrafish Genome Assembly WGS32

Organism:: Danio rerio (zebrafish)

Infraspecific name:: Strain: Tuebingen

Submitter:: SC

Date:: 2015/12/23

Assembly level:: Scaffold

Genome representation:: full

GenBank assembly accession:: GCA_001487895.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 605441 [UID] 2757618 [GenBank]

Select item 1406321117.

Organism:: Danio rerio (zebrafish)

Infraspecific name:: Strain: AB3

Submitter:: University of Chicago

Date:: 2022/10/05

Assembly level:: Scaffold

Genome representation:: full

GenBank assembly accession:: GCA_025582595.1 (latest)

RefSeq assembly accession:: n/a

IDs:: 14063211 [UID] 36516008 [GenBank]

Select item 1301386118.

fDanRer4.1 alternate haplotype

Organism:: Danio rerio (zebrafish)

Submitter:: WELLCOME SANGER INSTITUTE

Date:: 2022/06/17

Assembly type:: alternate-pseudohaplotype (alternate pseudohaplotype of diploid)

Assembly level:: Contig

Genome representation:: full

GenBank assembly accession:: GCA_944039255.1 (latest)

RefSeq assembly accession:: n/a

Excluded from RefSeq:: genome length too small

IDs:: 13013861 [UID] 33999618 [GenBank]

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