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ASM80611v1

Organism name:
archaeon GW2011_AR5 (archaea)
Taxonomy check:
Inconclusive
BioSample:
SAMN03217303
BioProject:
PRJNA268032
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2014/12/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_000806115.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JWKQ01
Assembly method:
idba_ud v. OCT-2011
Expected final version:
yes
Genome coverage:
1.0x
Sequencing technology:
Illumina HiSeq

IDs: 236691 [UID] 1426388 [GenBank]

See Genome Information for archaeon GW2011_AR5

History (Show revision history)

Comment

Global statistics

Total sequence length858,244
Total ungapped length858,224
Gaps between scaffolds0
Number of scaffolds3
Scaffold N50439,877
Scaffold L501
Number of contigs4
Contig N50433,077
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced858,2443858,224439,87710

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
archaeon GW2011_AR5archaeon GW2011_AR5

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana