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Source database (GenBank or RefSeq) File type

ASM130304v1

Organism name:

Gammaproteobacteria bacterium SG8_11 (g-proteobacteria)

Taxonomy check:

Inconclusive

Isolate:

SG8_11

BioSample:

SAMN03994160

BioProject:

PRJNA270657

Submitter:

University of Texas

Date:

2015/09/30

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
genus undefined

GenBank assembly accession:

GCA_001303045.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

LJNJ01

Assembly method:

IDBA v. UD

Expected final version:

yes

Genome coverage:

120.0x

Sequencing technology:

Illumina

IDs: 497021 [UID] 2363158 [GenBank]

See Genome Information for Gammaproteobacteria bacterium SG8_11

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001303045.1	n/a	n/a	ASM130304v1	Scaffold	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::09/11/2015 18:05:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::3,764
CDS::3,359
Pseudo Genes::356
rRNAs::1 (16S)
complete rRNAs:: 
partial rRNAs::1 (16S)
tRNAs::48
ncRNA::0
Frameshifted Genes::32
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	3,882,126
Total ungapped length	3,882,026
Gaps between scaffolds	0
Number of scaffolds	464
Scaffold N50	8,397
Scaffold L50	158
Number of contigs	467
Contig N50	8,343
Contig L50	159
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	464

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	84.04	0.01	0.01

Assembly

Genome Assembly

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Download Assembly

ASM130304v1

See Genome Information for Gammaproteobacteria bacterium SG8_11

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Global assembly definition

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result