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ASM130358v1

Organism name:
Betaproteobacteria bacterium SG8_41 (b-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
SG8_41
BioSample:
SAMN03994181
BioProject:
PRJNA270657
Submitter:
University of Texas
Date:
2015/09/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001303585.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LJTT01
Assembly method:
IDBA v. UD
Expected final version:
yes
Genome coverage:
120.0x
Sequencing technology:
Illumina

IDs: 497261 [UID] 2363658 [GenBank]

See Genome Information for Betaproteobacteria bacterium SG8_41

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/18/2015 17:21:01
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::3,523
CDS::3,177
Pseudo Genes::306
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::36
ncRNA::1
Frameshifted Genes::66
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,747,630
Total ungapped length3,747,630
Number of contigs147
Contig N5046,144
Contig L5024
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)147

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,747,6301473,747,63046,14400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Betaproteobacteria bacterium SG8_41Betaproteobacteria bacterium SG8_41

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022870505.1Burkholderia perseveranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.070.130.07

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena