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ASM143809v1

Organism name:
SAR86 cluster bacterium BACL1 MAG-120619-bin26 (g-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
BACL1 MAG-120619-bin26
BioSample:
SAMN03742002
BioProject:
PRJNA273799
Submitter:
Kungliga Tekniska Hogskolan
Date:
2015/11/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001438095.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LICB01
Assembly method:
Ray v. 2.3.1; Newbler v. MARCH-2014
Expected final version:
yes
Genome coverage:
108.0x
Sequencing technology:
Illumina HiSeq

IDs: 580481 [UID] 2585518 [GenBank]

See Genome Information for SAR86 cluster bacterium BACL1 MAG-120619-bin26

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/20/2015 14:03:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::1,740
CDS::1,410
Pseudo Genes::290
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::36
ncRNA::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,539,140
Total ungapped length1,539,140
Number of contigs347
Contig N507,726
Contig L5049
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)347

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,539,1403471,539,1407,72600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
SAR86 cluster bacterium BACL1 MAG-120619-bin26SAR86 cluster bacterium BACL1 MAG-120619-bin26

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900129365.1Clostridium fallaxtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.500.010.01

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena