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Betaproteobacteria bacterium Ga0077523

Organism name:
Betaproteobacteria bacterium Ga0077523 (b-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
Ga0077523
BioSample:
SAMN04254484
BioProject:
PRJNA301005
Submitter:
University of Glasgow
Date:
2015/12/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001464695.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LNDQ01
Assembly method:
Idba_ud v. 1.1.1
Expected final version:
yes
Genome coverage:
32.0x
Sequencing technology:
Illumina HiSeq

IDs: 593881 [UID] 2720588 [GenBank]

See Genome Information for Betaproteobacteria bacterium Ga0077523

History (Show revision history)

Comment

Global statistics

Total sequence length4,695,527
Total ungapped length4,695,527
Number of contigs156
Contig N5076,756
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)156

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,695,5271564,695,52776,75600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Betaproteobacteria bacterium Ga0077523Betaproteobacteria bacterium Ga0077523

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004011805.1Piscinibacter defluviitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type79.902.111.40

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena