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SCGC-AAA259I14

Organism name:
candidate division MSBL1 archaeon SCGC-AAA259I14 (euryarchaeotes)
Taxonomy check:
Inconclusive
Isolate:
SCGC-AAA259I14
BioSample:
SAMN03941702
BioProject:
PRJNA291812
Submitter:
KAUST
Date:
2016/02/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from single cell
  • genus undefined
GenBank assembly accession:
GCA_001549015.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LHXS01
Assembly method:
IDBA-UD v. 1.1.1
Expected final version:
yes
Single-cell amplification:
MDA
Genome coverage:
8.0x
Sequencing technology:
Illumina HiSeq

IDs: 635911 [UID] 2863018 [GenBank]

See Genome Information for candidate division MSBL1 archaeon SCGC-AAA259I14

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/10/2015 10:54:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::871
CDS::774
Pseudo Genes::91
rRNAs::
complete rRNAs::
partial rRNAs::
tRNAs::6
ncRNA::0
Frameshifted Genes::7
##Genome-Annotation-Data-END##

Global statistics

Total sequence length766,874
Total ungapped length766,874
Number of contigs120
Contig N507,697
Contig L5031
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)120

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced766,874120766,8747,69700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
candidate division MSBL1 archaeon SCGC-AAA259I14candidate division MSBL1 archaeon SCGC-AAA259I14

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana