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ASM160245v1

Organism name:
Betaproteobacteria bacterium UKL13-2 (b-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
UKL13-2
BioSample:
SAMN03894415
BioProject:
PRJNA312233
Submitter:
Oregon State University
Date:
2016/03/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001602455.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
Assembly method:
HGAP v. June 2015
Genome coverage:
143x
Sequencing technology:
PacBio

IDs: 711881 [UID] 3149778 [GenBank]

See Genome Information for Betaproteobacteria bacterium UKL13-2

History (Show revision history)

Comment

Bacteria available from a mixed culture in the Theo Dreher lab at Oregon State University.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/27/2015 14:37:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::3,087
CDS::2,772
Pseudo Genes::265
CRISPR Arrays::2
rRNAs::6 (5S, 16S, 23S)
tRNAs::43
ncRNA::1
Frameshifted Genes::29
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,387,087
Total ungapped length3,387,087
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_001602465.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP012157.1n/an/a

Assembly statistics

MoleculeTotal
Length
Chromosome 3,387,087

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Betaproteobacteria bacterium UKL13-2Betaproteobacteria bacterium UKL13-2

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_902832765.1Burkholderia glumaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.900.150.08

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena