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ASM162620v1

Organism name:
Acinetobacter sp. REDSEA-S21_B14 (g-proteobacteria)
Taxonomy check:
OK
Isolate:
REDSEA-S21_B14
BioSample:
SAMN04534552
BioProject:
PRJNA289734
Submitter:
King Abdullah University of Science and Technology
Date:
2016/04/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • many frameshifted proteins
  • metagenome
GenBank assembly accession:
GCA_001626205.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LUNC01
Assembly method:
IDBA-UD v. 1.1.1
Expected final version:
no
Genome coverage:
50.0x
Sequencing technology:
Illumina HiSeq

IDs: 728301 [UID] 3202478 [GenBank]

See Genome Information for Acinetobacter sp. REDSEA-S21_B14

History (Show revision history)

Comment

Global statistics

Total sequence length2,577,111
Total ungapped length2,576,406
Gaps between scaffolds0
Number of scaffolds517
Scaffold N505,269
Scaffold L50159
Number of contigs525
Contig N505,151
Contig L50163
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)517

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,577,1115172,576,4065,26980

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter sp. REDSEA-S21_B14Acinetobacter sp. REDSEA-S21_B14

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000271425.1Acinetobacter venetianustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.2979.0358.77

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna