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ASM162818v1

Organism name:
SAR86 cluster bacterium REDSEA-S45_B6 (g-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
REDSEA-S45_B6
BioSample:
SAMN04534654
BioProject:
PRJNA289734
Submitter:
King Abdullah University of Science and Technology
Date:
2016/04/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001628185.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
LUQZ01
Assembly method:
IDBA-UD v. 1.1.1
Expected final version:
no
Genome coverage:
50.0x
Sequencing technology:
Illumina HiSeq

IDs: 729281 [UID] 3204428 [GenBank]

See Genome Information for SAR86 cluster bacterium REDSEA-S45_B6

History (Show revision history)

Comment

Global statistics

Total sequence length1,572,056
Total ungapped length1,572,005
Gaps between scaffolds0
Number of scaffolds123
Scaffold N5019,596
Scaffold L5023
Number of contigs125
Contig N5019,596
Contig L5023
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)123

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,572,0561231,572,00519,59620

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
SAR86 cluster bacterium REDSEA-S45_B6SAR86 cluster bacterium REDSEA-S45_B6

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana