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ASM175101v1

Organism name:
Desulfobacterales bacterium C00003106 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
C00003106
BioSample:
SAMN05301625
BioProject:
PRJNA290197
Submitter:
California Institute of Technology
Date:
2016/10/03
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001751015.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MAXM01
Assembly method:
CLC Genomics Workbench v. 6.0
Expected final version:
yes
Genome coverage:
20.0x
Sequencing technology:
Illumina HiSeq

IDs: 804831 [UID] 3480298 [GenBank]

See Genome Information for Desulfobacterales bacterium C00003106

History (Show revision history)

Comment

Annotation was modified by submitter. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/11/2016 09:30:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,051
CDS (total)::2,015
Genes (coding)::1,758
CDS (coding)::1,758
Genes (RNA)::36
rRNAs::1, 1 (5S, 23S)
complete rRNAs::1, 1 (5S, 23S)
partial rRNAs::
tRNAs::31
ncRNAs::3
Pseudo Genes (total)::257
Pseudo Genes (ambiguous residues)::51 of 257
Pseudo Genes (frameshifted)::22 of 257
Pseudo Genes (incomplete)::202 of 257
Pseudo Genes (internal stop)::3 of 257
Pseudo Genes (multiple problems)::21 of 257
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,209,054
Total ungapped length2,193,742
Gaps between scaffolds0
Number of scaffolds370
Scaffold N507,447
Scaffold L5093
Number of contigs588
Contig N505,897
Contig L50116
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)370

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,209,0543702,193,7427,4472180

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Desulfobacterales bacterium C00003106Desulfobacterales bacterium C00003106

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000307105.1Desulfobacula toluolicatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.740.140.06

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena