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ASM177041v1

Organism name:
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_63_19 (b-proteobacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN04315920
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/10/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001770415.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MEQX01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 818111 [UID] 3526418 [GenBank]

See Genome Information for Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_63_19

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/06/2016 19:30:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,234
CDS (total)::4,170
Genes (coding)::3,982
CDS (coding)::3,982
Genes (RNA)::64
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::57
ncRNAs::4
Pseudo Genes (total)::188
Pseudo Genes (ambiguous residues)::75 of 188
Pseudo Genes (frameshifted)::21 of 188
Pseudo Genes (incomplete)::107 of 188
Pseudo Genes (internal stop)::1 of 188
Pseudo Genes (multiple problems)::16 of 188
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,653,029
Total ungapped length4,649,050
Gaps between scaffolds0
Number of scaffolds116
Scaffold N5061,549
Scaffold L5025
Number of contigs237
Contig N5039,607
Contig L5037
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)116

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,653,0291164,649,05061,5491210

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_63_19Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_63_19

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_902499075.1Burkholderia pseudomultivoranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type78.670.250.15

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena