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ASM177043v1

Organism name:
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_65_24 (b-proteobacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN04315989
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/10/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001770435.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MERA01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 818131 [UID] 3526448 [GenBank]

See Genome Information for Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_65_24

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/06/2016 19:28:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,203
CDS (total)::4,168
Genes (coding)::3,677
CDS (coding)::3,677
Genes (RNA)::35
rRNAs::1 (16S)
complete rRNAs::
partial rRNAs::1 (16S)
tRNAs::29
ncRNAs::5
Pseudo Genes (total)::491
Pseudo Genes (ambiguous residues)::167 of 491
Pseudo Genes (frameshifted)::29 of 491
Pseudo Genes (incomplete)::326 of 491
Pseudo Genes (internal stop)::7 of 491
Pseudo Genes (multiple problems)::38 of 491
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,273,965
Total ungapped length4,251,913
Gaps between scaffolds0
Number of scaffolds362
Scaffold N5014,042
Scaffold L50100
Number of contigs748
Contig N5010,499
Contig L50122
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)362

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,273,9653624,251,91314,0423860

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_65_24Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_65_24

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_007556605.1Tepidimonas sediministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.030.410.68

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena