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ASM177058v1

Organism name:
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14 (b-proteobacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN04315869
BioProject:
PRJNA288027
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/10/18
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001770585.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MERM01
Assembly method:
IDBA_UD v. 06.01.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2000

IDs: 818201 [UID] 3526588 [GenBank]

See Genome Information for Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/06/2016 20:18:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,919
CDS (total)::6,871
Genes (coding)::6,451
CDS (coding)::6,451
Genes (RNA)::48
rRNAs::1 (16S)
complete rRNAs::
partial rRNAs::1 (16S)
tRNAs::43
ncRNAs::4
Pseudo Genes (total)::420
Pseudo Genes (ambiguous residues)::107 of 420
Pseudo Genes (frameshifted)::49 of 420
Pseudo Genes (incomplete)::266 of 420
Pseudo Genes (internal stop)::27 of 420
Pseudo Genes (multiple problems)::29 of 420
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,788,860
Total ungapped length6,779,961
Gaps between scaffolds0
Number of scaffolds272
Scaffold N5047,808
Scaffold L5038
Number of contigs446
Contig N5032,281
Contig L5054
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)272

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,788,8602726,779,96147,8081740

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_14

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_023721795.1Zeimonas sediministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type79.721.823.19

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena