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ASM187112v1

Organism name:
Elusimicrobia bacterium CG1_02_37_114 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
CG1_02_37_114
BioSample:
SAMN04328241
BioProject:
PRJNA297582
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/11/09
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001871125.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MNXB01
Assembly method:
IDBA-UD v. 12.2012
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 885671 [UID] 3715518 [GenBank]

See Genome Information for Elusimicrobia bacterium CG1_02_37_114

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/31/2016 14:22:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,208
CDS (total)::2,160
Genes (coding)::2,053
CDS (coding)::2,053
Genes (RNA)::48
rRNAs::2, 1 (5S, 16S)
complete rRNAs::2, 1 (5S, 16S)
partial rRNAs::
tRNAs::43
ncRNAs::2
Pseudo Genes (total)::107
Pseudo Genes (ambiguous residues)::2 of 107
Pseudo Genes (frameshifted)::5 of 107
Pseudo Genes (incomplete)::95 of 107
Pseudo Genes (internal stop)::6 of 107
Pseudo Genes (multiple problems)::1 of 107
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,088,276
Total ungapped length2,087,807
Gaps between scaffolds0
Number of scaffolds130
Scaffold N5021,558
Scaffold L5032
Number of contigs138
Contig N5020,966
Contig L5033
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)130

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,088,2761302,087,80721,55880

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Elusimicrobia bacterium CG1_02_37_114Elusimicrobia bacterium CG1_02_37_114

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900095705.1Fusobacterium massiliensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type79.760.040.05

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena