U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM187160v1

Organism name:
Candidatus Micrarchaeota archaeon CG1_02_55_41 (archaea)
Taxonomy check:
Inconclusive
Isolate:
CG1_02_55_41
BioSample:
SAMN04328171
BioProject:
PRJNA297582
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/11/09
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001871605.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MNVI01
Assembly method:
IDBA-UD v. 12.2012
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 885911 [UID] 3716008 [GenBank]

See Genome Information for Candidatus Micrarchaeota archaeon CG1_02_55_41

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/31/2016 13:15:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::856
CDS (total)::823
Genes (coding)::768
CDS (coding)::768
Genes (RNA)::33
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::27
ncRNAs::3
Pseudo Genes (total)::55
Pseudo Genes (ambiguous residues)::3 of 55
Pseudo Genes (frameshifted)::5 of 55
Pseudo Genes (incomplete)::46 of 55
Pseudo Genes (internal stop)::2 of 55
Pseudo Genes (multiple problems)::1 of 55
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length744,456
Total ungapped length744,423
Gaps between scaffolds0
Number of scaffolds50
Scaffold N5021,248
Scaffold L5012
Number of contigs53
Contig N5020,956
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)50

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced744,45650744,42321,24830

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Micrarchaeota archaeon CG1_02_55_41Candidatus Micrarchaeota archaeon CG1_02_55_41

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_902384935.1Candidatus Norongarragalina meridionalissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.080.420.34

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena