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ASM189651v1

Organism name:
Candidatus Micrarchaeum sp. AZ1 (archaea)
Taxonomy check:
Inconclusive
BioSample:
SAMN02951672
BioProject:
PRJNA257436
Submitter:
Center for Genomic Sciences
Date:
2016/12/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_001896515.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JPUK01
Assembly method:
Newbler v. 2.3
Expected final version:
no
Genome coverage:
146.0x
Sequencing technology:
Illumina MiSeq

IDs: 911861 [UID] 3781358 [GenBank]

See Genome Information for Candidatus Micrarchaeum sp. AZ1

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/02/2014 15:45:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.7 (rev. 445095)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::881
CDS::840
Pseudo Genes::1
CRISPR Arrays::1
rRNAs::2 (5S, 23S)
tRNAs::38
ncRNA::0
Frameshifted Genes::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length980,507
Total ungapped length980,507
Number of contigs5
Contig N50313,950
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)5

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced980,5075980,507313,95000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Micrarchaeum sp. AZ1Candidatus Micrarchaeum sp. AZ1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009387755.1Candidatus Micrarchaeum acidiphilumsuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.750.910.88

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena