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ASM189985v1

Organism name:
Xanthomonadales bacterium 63-13 (g-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
63-13
BioSample:
SAMN05660638
BioProject:
PRJNA279279
Submitter:
Banfield Lab, University of California, Berkeley
Date:
2016/12/09
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_001899855.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MKWR01
Assembly method:
idba_ud v. 10.06.2014s
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq2500

IDs: 913541 [UID] 3784708 [GenBank]

See Genome Information for Lysobacterales bacterium 63-13

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/05/2016 18:24:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,282
CDS (total)::3,234
Genes (coding)::3,194
CDS (coding)::3,194
Genes (RNA)::48
rRNAs::1, 1 (5S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::1 (23S)
tRNAs::42
ncRNAs::4
Pseudo Genes (total)::40
Pseudo Genes (ambiguous residues)::2 of 40
Pseudo Genes (frameshifted)::7 of 40
Pseudo Genes (incomplete)::30 of 40
Pseudo Genes (internal stop)::3 of 40
Pseudo Genes (multiple problems)::2 of 40
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,747,714
Total ungapped length3,747,491
Gaps between scaffolds0
Number of scaffolds36
Scaffold N50231,928
Scaffold L507
Number of contigs43
Contig N50161,836
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)36

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,747,714363,747,491231,92870

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lysobacterales bacterium 63-13Lysobacterales bacterium 63-13

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900115085.1Dokdonella immobilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.6128.9023.37

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-lineage-matchna