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ASM191646v1

Organism name:
Lachnospira eligens (firmicutes)
Taxonomy check:
OK
Isolate:
37_24
BioSample:
SAMN05717270
BioProject:
PRJNA321218
Submitter:
None
Date:
2016/12/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genome length too small
GenBank assembly accession:
GCA_001916465.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MNSM01
Assembly method:
IDBA_UD v. 1.1
Genome coverage:
1x
Sequencing technology:
Illumina HiSeq

IDs: 932201 [UID] 3916678 [GenBank]

See Genome Information for Lachnospira eligens

There are 118 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/31/2016 12:04:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,584
CDS (total)::1,562
Genes (coding)::1,542
CDS (coding)::1,542
Genes (RNA)::22
rRNAs::
complete rRNAs::
partial rRNAs::
tRNAs::18
ncRNAs::4
Pseudo Genes (total)::20
Pseudo Genes (ambiguous residues)::1 of 20
Pseudo Genes (frameshifted)::7 of 20
Pseudo Genes (incomplete)::14 of 20
Pseudo Genes (internal stop)::0 of 20
Pseudo Genes (multiple problems)::2 of 20
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,743,856
Total ungapped length1,743,559
Gaps between scaffolds0
Number of scaffolds15
Scaffold N50146,003
Scaffold L504
Number of contigs19
Contig N50146,003
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)15

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,743,856151,743,559146,00340

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lachnospira eligensLachnospira eligens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000146185.1[Eubacterium] eligens ATCC 27750suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000146185.1Lachnospira eligenssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type94.8781.5950.25
Best-match type94.8781.5950.25

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna