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Aspca3

Organism name:
Aspergillus carbonarius ITEM 5010 (ascomycete fungi)
Infraspecific name:
Strain: ITEM 5010
BioSample:
SAMN00727628
BioProject:
PRJNA34741
Submitter:
DOE Joint Genome Institute
Date:
2017/02/15
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001990825.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AHIG01
Assembly method:
Newbler v. 2.0.00.20
Genome coverage:
17.78x
Sequencing technology:
454; Sanger dideoxy sequencing

IDs: 1006561 [UID] 4130988 [GenBank]

See Genome Information for Aspergillus carbonarius

History (Show revision history)

Comment

URL -- http://genome.jgi.doe.gov/Aspca3
JGI Project ID: 52354
The DNA was provided by Giancarlo Perrone (giancarlo.perrone@ispa.cnr.it)
The strain is available from ITEM (http://server.ispa.cnr.it/ITEM/Collection/)
Contacts: Scott E. Baker (scott.baker@pnnl.gov)
Assembly and annotation done by JGI.
The JGI and collaborators endorse the principles for the distribution and use ... of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Global statistics

Total sequence length36,149,134
Total ungapped length34,120,674
Gaps between scaffolds0
Number of scaffolds829
Scaffold N501,827,541
Scaffold L508
Number of contigs1,229
Contig N50118,896
Contig L5085
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,229

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced36,149,13482934,120,6741,827,5414000