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ASM200740v1

Organism name:
Gammaproteobacteria bacterium Gsub (g-proteobacteria)
Taxonomy check:
Inconclusive
BioSample:
SAMN03339796
BioProject:
PRJNA275177
Submitter:
Hong Kong University of Science and Technology
Date:
2017/02/27
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002007405.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JYIN01
Assembly method:
SPAdes v. 3.1.0
Expected final version:
yes
Genome coverage:
745.0x
Sequencing technology:
Illumina

IDs: 1013271 [UID] 4161668 [GenBank]

See Genome Information for Gammaproteobacteria bacterium Gsub

History (Show revision history)

Comment

Global statistics

Total sequence length1,371,853
Total ungapped length1,371,853
Number of contigs14
Contig N50103,257
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)14

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,371,853141,371,853103,25700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gammaproteobacteria bacterium GsubGammaproteobacteria bacterium Gsub

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001281385.1Candidatus Pseudothioglobus singularissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.630.560.45

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena