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USCg1.0

Organism name:
Chromatiales bacterium USCg_Taylor (g-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
USCg_Taylor
BioSample:
SAMN06219543
BioProject:
PRJNA361027
Submitter:
Princeton University
Date:
2017/02/27
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002007425.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
MUGK01
Assembly method:
IDBA_UD v. 1.1.1
Expected final version:
no
Genome coverage:
172.0x
Sequencing technology:
Illumina HiSeq

IDs: 1013281 [UID] 4161688 [GenBank]

See Genome Information for Chromatiales bacterium USCg_Taylor

History (Show revision history)

Comment

Annotated using prokka 1.12-beta from https://github.com/tseemann/prokka

Global statistics

Total sequence length2,961,675
Total ungapped length2,961,531
Gaps between scaffolds0
Number of scaffolds246
Scaffold N5017,509
Scaffold L5056
Number of contigs250
Contig N5016,761
Contig L5057
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)246

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,961,6752462,961,53117,50940

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Chromatiales bacterium USCg_TaylorChromatiales bacterium USCg_Taylor

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016583515.1Marichromatium graciletype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.710.060.04

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena