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ASM225516v1

Organism name:
Euryarchaeota archaeon ex4484_178 (euryarchaeotes)
Taxonomy check:
Inconclusive
Isolate:
ex4484_178
BioSample:
SAMN06647955
BioProject:
PRJNA362212
Submitter:
The University of Texas at Austin
Date:
2017/08/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002255165.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
NJEO01
Assembly method:
IDBA v. v1.0.9
Expected final version:
yes
Genome coverage:
17x
Sequencing technology:
Illumina HiSeq

IDs: 1173041 [UID] 4930648 [GenBank]

See Genome Information for Euryarchaeota archaeon ex4484_178

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::06/21/2017 09:04:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,050
CDS (total)::1,027
Genes (coding)::979
CDS (coding)::979
Genes (RNA)::23
rRNAs::
complete rRNAs::
partial rRNAs::
tRNAs::22
ncRNAs::1
Pseudo Genes (total)::48
Pseudo Genes (ambiguous residues)::0 of 48
Pseudo Genes (frameshifted)::32 of 48
Pseudo Genes (incomplete)::17 of 48
Pseudo Genes (internal stop)::1 of 48
Pseudo Genes (multiple problems)::2 of 48
##Genome-Annotation-Data-END##

Global statistics

Total sequence length890,663
Total ungapped length890,663
Number of contigs111
Contig N507,803
Contig L5039
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)111

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced890,663111890,6637,80300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Euryarchaeota archaeon ex4484_178Euryarchaeota archaeon ex4484_178

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana