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ASM228199v1

Organism name:
Novosphingobium sp. 17-62-8 (a-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
17-62-8
BioSample:
SAMN06622252
BioProject:
PRJNA379596
Submitter:
None
Date:
2017/08/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • fragmented assembly
GenBank assembly accession:
GCA_002281995.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
NCIC01
Assembly method:
idba_ud v. 1
Expected final version:
yes
Genome coverage:
8x
Sequencing technology:
Illumina HiSeq

IDs: 1187381 [UID] 4982878 [GenBank]

See Genome Information for Novosphingobium sp. 17-62-8

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/07/2017 21:14:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::731
CDS (total)::727
Genes (coding)::687
CDS (coding)::687
Genes (RNA)::4
rRNAs::
complete rRNAs::
partial rRNAs::
tRNAs::4
ncRNAs::0
Pseudo Genes (total)::40
Pseudo Genes (ambiguous residues)::3 of 40
Pseudo Genes (frameshifted)::14 of 40
Pseudo Genes (incomplete)::23 of 40
Pseudo Genes (internal stop)::6 of 40
Pseudo Genes (multiple problems)::6 of 40
##Genome-Annotation-Data-END##

Global statistics

Total sequence length668,471
Total ungapped length668,403
Gaps between scaffolds0
Number of scaffolds190
Scaffold N504,143
Scaffold L5040
Number of contigs193
Contig N504,029
Contig L5041
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)190

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced668,471190668,4034,14330

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Novosphingobium sp. 17-62-8Novosphingobium sp. 17-62-8

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014196055.1Novosphingobium hassiacumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.7521.023.19

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena