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ASM228251v1

  • Anomalous assembly.
Organism name:
Burkholderiales bacterium 34-67-9 (b-proteobacteria)
Taxonomy check:
Inconclusive
Isolate:
34-67-9
BioSample:
SAMN06622212
BioProject:
PRJNA379596
Submitter:
None
Date:
2017/08/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
  • derived from metagenome
  • fragmented assembly
  • genus undefined
GenBank assembly accession:
GCA_002282515.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
NCJQ01
Assembly method:
idba_ud v. 1
Expected final version:
yes
Genome coverage:
9x
Sequencing technology:
Illumina HiSeq

IDs: 1187641 [UID] 4983408 [GenBank]

See Genome Information for Burkholderiales bacterium 34-67-9

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/07/2017 22:28:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,484
CDS (total)::1,460
Genes (coding)::1,356
CDS (coding)::1,356
Genes (RNA)::24
rRNAs::1 (23S)
complete rRNAs::
partial rRNAs::1 (23S)
tRNAs::21
ncRNAs::2
Pseudo Genes (total)::104
Pseudo Genes (ambiguous residues)::4 of 104
Pseudo Genes (frameshifted)::24 of 104
Pseudo Genes (incomplete)::76 of 104
Pseudo Genes (internal stop)::7 of 104
Pseudo Genes (multiple problems)::6 of 104
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,316,964
Total ungapped length1,316,837
Gaps between scaffolds0
Number of scaffolds397
Scaffold N504,214
Scaffold L50105
Number of contigs401
Contig N504,124
Contig L50106
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)397

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,316,9643971,316,8374,21440

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Burkholderiales bacterium 34-67-9Burkholderiales bacterium 34-67-9

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000828915.1Serpentinimonas maccroryisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.0289.3344.84

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelineage-matchna