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ASM240776v1

Organism name:
Aminobacterium sp. UBA5393 (bacteria)
Taxonomy check:
OK
Isolate:
UBA5393
BioSample:
SAMN06454651
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/10/03
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • annotation fails MAG completeness check
  • derived from metagenome
GenBank assembly accession:
GCA_002407765.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DHOJ01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
13.06x
Sequencing technology:
Illumina

IDs: 1252621 [UID] 5149758 [GenBank]

See Genome Information for Aminobacterium sp. UBA5393

History (Show revision history)

Comment

Global statistics

Total sequence length2,011,957
Total ungapped length1,981,212
Gaps between scaffolds0
Number of scaffolds73
Scaffold N5043,442
Scaffold L5013
Number of contigs234
Contig N5023,818
Contig L5028
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)73

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,011,957731,981,21243,4421610

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aminobacterium sp. UBA5393Aminobacterium sp. UBA5393

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000526395.1Aminobacterium mobiletype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.0095.9090.22

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna