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ASM249452v1

Organism name:
archaeon UBA490 (archaea)
Taxonomy check:
Inconclusive
Isolate:
UBA490
BioSample:
SAMN06027431
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/10/10
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002494525.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
DACC01
Assembly method:
CLC de novo assembler v. 4.4.1
Genome coverage:
36.73x
Sequencing technology:
Illumina HiSeq 2000

IDs: 1298481 [UID] 5258918 [GenBank]

See Genome Information for archaeon UBA490

History (Show revision history)

Comment

Global statistics

Total sequence length635,160
Total ungapped length633,509
Gaps between scaffolds0
Number of scaffolds11
Scaffold N5087,937
Scaffold L503
Number of contigs16
Contig N5048,501
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)11

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced635,16011633,50987,93750

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
archaeon UBA490archaeon UBA490

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
none-foundnana

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match typena0.000.00

ANI result

Taxonomy check statusBest match statusComment
Inconclusivenana