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ASM278108v1

Organism name:
Caldiserica bacterium CG02_land_8_20_14_3_00_36_38 (bacteria)
Taxonomy check:
Inconclusive
Isolate:
CG02_land_8_20_14_3_00_36_38
BioSample:
SAMN06659164
BioProject:
PRJNA362739
Submitter:
None
Date:
2017/11/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_002781085.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PETP01
Assembly method:
IDBA-UD v. 02.2016
Expected final version:
yes
Genome coverage:
10x
Sequencing technology:
Illumina HiSeq

IDs: 1444091 [UID] 5661768 [GenBank]

See Genome Information for Caldiserica bacterium CG02_land_8_20_14_3_00_36_38

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/07/2017 13:47:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,131
CDS (total)::1,097
Genes (coding)::1,085
CDS (coding)::1,085
Genes (RNA)::34
tRNAs::31
ncRNAs::3
Pseudo Genes (total)::12
Pseudo Genes (ambiguous residues)::3 of 12
Pseudo Genes (frameshifted)::3 of 12
Pseudo Genes (incomplete)::4 of 12
Pseudo Genes (internal stop)::3 of 12
Pseudo Genes (multiple problems)::1 of 12
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,010,265
Total ungapped length1,009,748
Gaps between scaffolds0
Number of scaffolds164
Scaffold N507,571
Scaffold L5045
Number of contigs176
Contig N507,393
Contig L5046
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)164

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,010,2651641,009,7487,571120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Caldiserica bacterium CG02_land_8_20_14_3_00_36_38Caldiserica bacterium CG02_land_8_20_14_3_00_36_38

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000284335.1Caldisericum exiletype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.890.900.57

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena