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Source database (GenBank or RefSeq) File type

ASM279624v1

Organism name:

Gammaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_46_22 (g-proteobacteria)

Taxonomy check:

Inconclusive

Isolate:

CG11_big_fil_rev_8_21_14_0_20_46_22

BioSample:

SAMN06659501

BioProject:

PRJNA362739

Submitter:

DOE Joint Genome Institute

Date:

2017/11/14

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

derived from metagenome
genus undefined

GenBank assembly accession:

GCA_002796245.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

PCWT01

Assembly method:

IDBA-UD v. 02.2016

Expected final version:

yes

Genome coverage:

10x

Sequencing technology:

Illumina HiSeq

IDs: 1451741 [UID] 5681868 [GenBank]

See Genome Information for Gammaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_46_22

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002796245.1	n/a	n/a	ASM279624v1	Scaffold	Latest GenBank

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::10/05/2017 18:24:08
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,085
CDS (total)::2,043
Genes (coding)::2,016
CDS (coding)::2,016
Genes (RNA)::42
rRNAs::1, 1, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::2 (23S)
tRNAs::35
ncRNAs::3
Pseudo Genes (total)::27
Pseudo Genes (ambiguous residues)::12 of 27
Pseudo Genes (frameshifted)::6 of 27
Pseudo Genes (incomplete)::9 of 27
Pseudo Genes (internal stop)::2 of 27
Pseudo Genes (multiple problems)::2 of 27
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	2,118,439
Total ungapped length	2,117,109
Gaps between scaffolds	0
Number of scaffolds	73
Scaffold N50	60,470
Scaffold L50	11
Number of contigs	121
Contig N50	43,408
Contig L50	16
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	73

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	85.71	0.21	0.17

Assembly

Genome Assembly

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ASM279624v1

See Genome Information for Gammaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_46_22

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

Related Information

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Global assembly definition

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result