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ASM286922v1

Organism name:
Candidatus Muiribacterium halophilum (bacteria)
Taxonomy check:
OK
Isolate:
BM706
BioSample:
SAMN07982665
BioProject:
PRJNA387015
Submitter:
University of California, Berkeley
Date:
2018/01/09
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_002869225.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
PKTG01
Assembly method:
MEGAHIT v. 1.0.2
Expected final version:
yes
Genome coverage:
56.3x
Sequencing technology:
Illumina HiSeq

IDs: 1514581 [UID] 5848728 [GenBank]

See Genome Information for Candidatus Muiribacterium halophilum

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/03/2018 16:12:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,744
CDS (total)::2,700
Genes (coding)::2,654
CDS (coding)::2,654
Genes (RNA)::44
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::
tRNAs::39
ncRNAs::2
Pseudo Genes (total)::46
Pseudo Genes (ambiguous residues)::5 of 46
Pseudo Genes (frameshifted)::5 of 46
Pseudo Genes (incomplete)::9 of 46
Pseudo Genes (internal stop)::29 of 46
Pseudo Genes (multiple problems)::2 of 46
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,928,565
Total ungapped length2,928,453
Gaps between scaffolds0
Number of scaffolds148
Scaffold N5033,603
Scaffold L5024
Number of contigs154
Contig N5032,070
Contig L5024
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)148

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,928,5651482,928,45333,60360

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Muiribacterium halophilumCandidatus Muiribacterium halophilum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004365575.1Hypnocyclicus thermotrophustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.970.090.12

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected